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Detailed information on CNT30349562


BLAST search results

BLAST vs Swiss-Prot:
sp|Q655S1|FTSH2_ORYSJ, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694290Eragrostis tefOryza sativa44.0922.1392.18179forward
CNT30673606Eragrostis tefSetaria viridis14.0421.1196.4957forward
CNT30373918Eragrostis tefArabidopsis thaliana35.7120.8386.9145forward
CNT30380808Eragrostis tefManihot esculenta46.5528.2185.71189forward
CNT30504438Eragrostis tefNicotiana attenuata32.0215.0386.15130forward
CNT3091279Eragrostis tefSolanum tuberosum26.3543.3282.24107forward
CNT30543849Eragrostis tefBrassica napus32.7644.7880.45133forward
CNT30144812Eragrostis tefMedicago truncatula28.5713.8387.07116forward
CNT30443360Eragrostis tefAegilops tauschii97.2957.6691.39395forward
CNT3079806Eragrostis tefBrassica juncea24.8824.2882.18101forward
CNT30479936Eragrostis tefArabidopsis halleri29.3110.6284.87119forward
CNT30370551Eragrostis tefOryza glumipatula49.2623.593200forward
CNT30102190Eragrostis tefOryza rufipogon30.5432.1291.94124forward
CNT30576794Eragrostis tefOryza barthii97.2966.8491.9395forward

Expression of CNT30349562

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MAASFRRFARSAPLNPGLSKAESKMSALLVAAITMIPVFPSKPSISVKS*

>peptide 2 (64 aa)
RKLHAQLRGKQRDFCSSHLSSQFLPYQPLFCQLNHQSLWKKLLSSHVGQPIWLLHSEDLPGQLH*

>peptide 3 (32 aa)
ANCMPNFVVSNETFALPICHHSSFHTSHYSVN*

Sequence

>CNT30349562
CCGCAAATTGCATGCCCAACTTCGTGGTAAGCAACGAGACTTTTGCTCTTCCCATCTGTCATCACAGTTCCTTCCATACCAGCCACTATTCTGTCAATTG
AATCATCAATCTCTTTGGAAGAAATTGCTGTCCTCCCACGTCGGCCAGCCAATATGGCTGCTTCATTCAGAAGATTTGCCAGGTCAGCTCCACTGAACCC
AGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGT
TGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGG
CGTTCT