Detailed information on CNT30117588


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187050Oryza nivaraSecale cereale36.3748.2989.98439forward
CNT30300806Oryza nivaraTriticum aestivum30.0744.4392.56363forward
CNT30224983Oryza nivaraHordeum vulgare19.7239.0295.8238forward
CNT30394515Oryza nivaraTriticum turgidum29.4943.3193.54356forward
CNT30589400Oryza nivaraMusa acuminata29.8352.6390.28360forward
CNT30441097Oryza nivaraAegilops tauschii23.1246.8994.98279forward
CNT30239865Oryza nivaraAvena sativa51.6268.5488.76623forward
CNT30664789Oryza nivaraTriticum dicoccoides40.2753.8289.71486forward
CNT3012136Oryza nivaraZea mays24.8644.3191300forward
CNT30129910Oryza nivaraCorymbia citriodora24.8647.6293.33300forward
CNT30685649Oryza nivaraTriticum urartu40.2751.7689.71486forward
CNT30721767Oryza nivaraTriticum spelta19.7231.6996.22238forward
CNT30108138Oryza nivaraOryza longistaminata48.371.9898.8583forward
CNT30103422Oryza nivaraOryza rufipogon67.5262.8499.63815forward
CNT30577669Oryza nivaraOryza barthii54.4369.9798.78657forward
CNT30582317Oryza nivaraEchinochloa crusgalli42.6758.5288.35515forward

Expression of CNT30117588

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 2 (63 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPSAPSIAHREWITSSSRFLANVSGSAESPAVSHP*

>peptide 3 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 4 (87 aa)
FFLRPNALDFNPLNQRIHYLPRFDPIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIKITPRIST*

Sequence

>CNT30117588
TTTTTTTTAAGACCAAACGCTTTGGATTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGACCCAATCTATTGTATACGTAAATTTAAAG
TACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTTTGGGATTGAGGGAGTATT
TGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAAAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCA
AAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAA
CTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCG
TTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGG
CGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGG
GTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCG
TGGATCAGGCTCGGGTTGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGA
GCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCC
GTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGC
GCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGT
GTGAGTT