Detailed information on CNT30673064


BLAST search results

BLAST vs Swiss-Prot:
sp|P40393|RIC2_ORYSJ, E-value = 6e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694297Setaria viridisOryza sativa46.7819.3895.65138forward
CNT30301189Setaria viridisTriticum aestivum27.469.8990.1281reverse complement
CNT30396261Setaria viridisTriticum turgidum27.466.2390.1281reverse complement
CNT30568133Setaria viridisActinidia chinensis37.976.1890.18112forward
CNT30231532Setaria viridisAnanas comosus48.1427.9586.62142forward
CNT30215813Setaria viridisHelianthus annuus45.4211.8384.33134forward
CNT30720801Setaria viridisTriticum spelta43.0519.3688.19127reverse complement
CNT30338755Setaria viridisEragrostis tef48.1425.5497.89142forward
CNT30368401Setaria viridisSorghum bicolor34.5828.3393.14102forward

Expression of CNT30673064

Peptides detected in this lncRNA

>peptide 1 (97 aa)
PLLAGGVPNLGLDDLAVDLEAAGGELDADGGLGLEAELVLGEAGEEVLGLDLAGAGWWCSVTGIGRGGASEEAIKWLSTTSIGFASCQRVEDGRVVGR

>peptide 2 (76 aa)
LSWPAVSQIWALMTLPSTWRLRVANSTPMVDLDSRLNSFLVKRERRFWVWISLEPGGGAVSLELGGAVPVRRQSSG*

Sequence

>CNT30673064
ACCTCTCCTGGCCGGCGGTGTCCCAAATCTGGGCCTTGATGACCTTGCCGTCGACCTGGAGGCTGCGGGTGGCGAACTCGACGCCGATGGTGGACTTGGA
CTCGAGGCTGAACTCGTTCTTGGTGAAGCGGGAGAGGAGGTTTTGGGTCTGGATCTCGCTGGAGCCGGGTGGTGGTGCAGTGTCACTGGAATTGGGAGGG
GCGGTGCCAGTGAGGAGGCAATCAAGTGGTTGAGCACTACTAGTATTGGGTTTGCCAGTTGCCAAAGGGTTGAAGACGGAAGAGTGGTTGGCCGT