Detailed information on CNT30396261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673064Triticum turgidumSetaria viridis6.2327.4690.1281reverse complement
CNT30192027Triticum turgidumSecale cereale14.1444.3492.39184forward
CNT30301189Triticum turgidumTriticum aestivum25.1339.9399.69327forward
CNT30368401Triticum turgidumSorghum bicolor7.9228.6189.32103reverse complement

Expression of CNT30396261

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MYLYRHVCMFTSFVPCLSNPLLMNLFVRFGLAGSSLDQMFKYSPIHCIDLESTSPSSTPSK*

>peptide 2 (60 aa)
RRPASTSTTSSPASPATRSTSTPSPPSASSSPPAPSSRQSAAGRTRLLFCLDLHTKSSWT*

>peptide 3 (82 aa)
MYVYFICSLSVQSPPNEFVCSIWISRLVPGPDVQVQPHPLHRPRVNITIKYAIKVIHHSTINYALLYLLSLVLLFAGKHKEN*

>peptide 4 (74 aa)
GVRRRQVQHPLPLHLQRVLPRLQVHHRRRVRHPHPPRDKVRLDERGCYSALICTQRVLGPDLKQGYLRLQANNV*

>peptide 5 (32 aa)
MTSSYVEEHVPWYPRVDRFTLAERFICRSQCL*

>peptide 6 (34 aa)
MVIYMKFEVPGRAIFDGQTSCCDVNECMEFHMFCS

>peptide 7 (38 aa)
MPTCLLPYYVLLELTLFMSKPGFILFACRHHSSVGLFT*

>peptide 8 (51 aa)
PASGVDKYNILSRFTCNAFYLDSKSTIGVEFATRTLLATKCGWTNEAAILP*

Sequence

>CNT30396261
CCGGCGTCCGGCGTCGACAAGTACAACATCCTCTCCCGCTTCACCTGCAACGCGTTCTACCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCC
GCACCCTCCTCGCGACAAAGTGCGGCTGGACGAACGAGGCTGCTATTCTGCCTTGATCTGCACACAAAGAGTTCTTGGACCTGACCTGAAGCAAGGATAC
CTACGGCTGCAAGCCAACAATGTCTGAAGACAGGCGCTGCTTGTCGATGTTCTCCGCATAACGATAGGCTTCCATGTATTTTCCACTTTCCTTTTCGCTT
TCTGTAATGCTAACTTGACGGTCACCCTACAGTTTGTTGGCTGTTGCAACCCAGCAGCGGCACTTCCATTTTAACGCATGTACTAGTGTGCTAAAACTTG
CAAAAGACACAAATCTTGAGCTTTCTTTATCAGCTTGTTGTTGCTGCTCCTTGTGTACAATGATTGATGTTGCTCTAGTTAGTGTTGTATAGGAAGAAAG
AGGATGTATTTATATAGACATGTATGTATGTTTACTTCATTTGTTCCTTGTCTGTCCAATCCCCTCCTAATGAATTTGTTTGTTCGATTTGGATTAGCAG
GCTCGTCCCTGGACCAGATGTTCAAGTACAGCCCCATCCACTGCATCGACCTAGAGTCAACATCACCATCAAGTACGCCATCAAAGTAATTCACCACTCC
ACCATCAACTATGCTTTGCTCTACTTGCTCTCCTTAGTTTTGCTCTTTGCTGGAAAGCACAAAGAAAATTGAAGCTATGTAGATGATTTGATCTGAAGAG
GGTCAAAGAGAAAATGCCCACATGTTTACTGCCTTATTATGTTCTGCTTGAGTTGACACTATTTATGTCCAAACCTGGGTTTATACTCTTTGCTTGTCGT
CATCACTCATCGGTTGGGCTGTTTACTTAATGTATTTGTGTCTGATTTGCTCCATCATATTTCCTGATGTACTTCTACATATATATGTTGGTTGTAATCT
ACTTGAATGATCCAAGTACTTGATATTCCATTCTGTTCTTGTAGGTGAATGGAGCTTGTGTTGTTGGTAGAACTCCATTGATGACTTCTTCCTATGTTGA
AGAGCATGTTCCGTGGTATCCAAGAGTAGATAGATTTACACTGGCAGAGCGTTTTATTTGTCGATCGCAATGTTTGTGATTGTGTGGAATATTGTATGGT
TATCTACATGAAGTTTGAAGTTCCTGGGCGTGCAATATTTGATGGTCAAACAAGTTGTTGTGATGTGAACGAGTGTATGGAGTTTCACATGTTTTGTTCT
G