Detailed information on CNT30720801


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673064Triticum speltaSetaria viridis19.3643.0588.19127reverse complement
CNT30231532Triticum speltaAnanas comosus17.6822.8384.48116reverse complement
CNT30338755Triticum speltaEragrostis tef19.3622.8486.61127reverse complement
CNT30368401Triticum speltaSorghum bicolor15.5528.3393.14102reverse complement

Expression of CNT30720801

SRR9114152: 4.05 RPKM

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSILLNSQFSWSNSALDANGHHDSVMRRGLWSNSRLVWNTMDRAKSGPIFFLNSLLSSLDDFSFLL*

>peptide 2 (35 aa)
MQMDIMILLCAEVCGQILDWCGTPWTGQNQVQFFS*

>peptide 3 (93 aa)
SPASPATSSASSPSPPSGGSSSPPAPSRSTTRSSRPRFGRSPVFLSPSVRQQLWRPWMGTIAEAPFCLFLLDAFGLFGIRPCSSRFAFGRCRV*

>peptide 4 (70 aa)
LPLHPQRVQPRVQVHHQGGRVRHPLPLGRRQGRQGRDLGDRRSSYPRLFGSSCGDHGWELSQKHHFAFFY*

>peptide 5 (33 aa)
MDGNYRRSTILPFSIRCLWIVWHQTLFKQICFW*

Sequence

>CNT30720801
TCTCCCGCTTCACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCAGGGGGGTCGAGTTCGCCACCCGCTCCCTCTAGGTCGACGACAAGGTCGT
CAAGGCCGAGATTTGGGAGATCGCCGGTCTTCCTATCCCCGTCTGTTCGGCAGCAGTTGTGGAGACCATGGATGGGAACTATCGCAGAAGCACCATTTTG
CCTTTTTCTATTAGATGCCTTTGGATTGTTTGGCATCAGACCTTGTTCAAGCAGATTTGCTTTTGGTAGATGCAGAGTATAGATTAAGTATTCAATAAAA
TTCACCACATGAGTATACTACTTAATAGCCAATTTTCGTGGTCAAATTCAGCCCTGGATGCAAATGGACATCATGATTCTGTTATGCGCCGAGGTCTGTG
GTCAAATTCTCGATTGGTGTGGAACACCATGGACAGGGCAAAATCAGGTCCAATTTTTTTCTTGAATAGCCTACTGTCTTCACTGGACGATTTTTCTTTT
CTTCTTTGACCCAGTTGATTGTATGGCACTGAAATATAAATATTTGTTTGCTCGTCCTCCCCTTTGGAAATTCATACCATGCCTGGAAATGTTTGATTGA
CCATCTTCTTCTTATTGATCCATAAAAACTTGACATTTTTGTTGTAAAAACATACC