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Detailed information on CNT30215813


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJH0|RAA1F_ARATH, E-value = 7e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673064Helianthus annuusSetaria viridis11.8345.4284.33134forward
CNT30378531Helianthus annuusArabidopsis thaliana17.3947.0280.2197forward
CNT30402584Helianthus annuusBeta vulgaris43.4248.1478.46492forward
CNT30231532Helianthus annuusAnanas comosus11.5625.7983.21131forward
CNT30338755Helianthus annuusEragrostis tef13.6827.8884.52155forward
CNT30368401Helianthus annuusSorghum bicolor8.9128.0686.14101forward

Expression of CNT30215813

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGNIIILQICLSIYIRERKCIKCRARKSIEISKG

>peptide 2 (37 aa)
MTCYIVDKQCPNCTSVVCTCDCTECTVPGQQCPKSGP*

>peptide 3 (43 aa)
MLRVANSTPMVDLDSRLNSFRVNLERRLDLPTPESPMRTSLNK*

Sequence

>CNT30215813
AGCAAAAGCAATACTTATTATAACAATGACAAATCATACAACCATCAGTAAAAGATTGATATTGAGAAATTGGTAAATATTCCCTTTGTTCATAGTTGCC
AGCCGACAATTAACAATACTGTCAATACATGAATAGCAATAGAATCTTTGATACATTTGGAATGCCAAAACCACATTCCTCACTCAACTAAACTATGATG
TTGCTCAATTGTGTCGTTCCAGAAATGTCCTTATAACCGCATTTAGTTTAAGCTAAACGGCTTAAACTGTGATTTGTACTAGATGTTCACGTAATAATTA
GTTAAAACTTACAGGGAGTGAAACCGTTAAGTAGAGCAGCAGCCAACTTTCTTCAACGCTGACACATCATCCTTACTGCCAACGTTAATTGTCTGTCCCT
TTGGCAAAGCAGCCTGATCATCTCCGGCATCAAGAGCCTTTCGGCTAACAACCTGGTGGATTTGAGTAAGAACTTCGGTGAAAGCGTTTTCAACGTTTGA
TGATTCAAGTGCGGATGTTTCCATGAAATACATGTTTTCTTTTTCAGCAAAGGTTTTGGCATCTTCAGAGGTTACAGCGCGTAAGTGACGTAAATCAGAT
TTGTTTCCTACAAGCATCATGACGATGTTGGAATCCGTATGGTCACGAAGCTCCTTTAGCCACCTTTCCACATTTTCAAAGGTCACATGACGTGTTACAT
CGTAGACAAGCAATGCCCCAACTGCACCTCGGTAGTATGCACTTGTGATTGCACGGAGTGTACCGTTCCTGGCCAGCAGTGTCCCAAATCTGGGCCTTGA
CAACCTTTTCATCGACTTTAATGCTGCGAGTGGCGAATTCGACGCCGATGGTTGACTTAGACTCGAGACTGAACTCGTTTCGGGTGAACCTGGAGAGGAG
ATTGGATTTGCCGACACCGGAATCACCGATGAGAACTAGTTTGAACAAGTAATCGTAATCATCGTCTGCTCTGTATGCACCCATTTGCTCTGTAGTTGTT
GAGAAAGAGTTTGCAGATCTGTTGTTGAAAATGGGGAATATTATAATTTTACAGATCTGTCTATCTATCTATATAAGAGAGAGAAAGTGTATCAAGTGCA
GAGCAAGGAAAAGCATCGAGATTTCAAAGGGTT