Detailed information on CNT30231532


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690690Ananas comosusOryza sativa23.4320.1789.92119forward
CNT30673064Ananas comosusSetaria viridis27.9548.1486.62142forward
CNT30316968Ananas comosusCorylus avellana11.8122.3988.3360forward
CNT30378531Ananas comosusArabidopsis thaliana35.8343.4480.22182forward
CNT30562712Ananas comosusActinidia chinensis34.6526.1979.55176forward
CNT30215813Ananas comosusHelianthus annuus25.7911.5683.21131forward
CNT30720801Ananas comosusTriticum spelta22.8317.6884.48116reverse complement
CNT30338755Ananas comosusEragrostis tef41.5437.9587.2211forward
CNT30368401Ananas comosusSorghum bicolor28.1539.7288.81143forward
CNT30332519Ananas comosusDioscorea rotundata15.1621.2185.7177forward

Expression of CNT30231532

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MPPPPPPPPPPPPPPPPPPLPTTPTTTTMIRSAIPPPPWEQRISGSSREREGEVVEWRWGMRDGI

>peptide 2 (93 aa)
SNNHSKRQKNLDLSIYKDQEPNREEGVRVSDLSCPAVSQIWALTTLSSTRMLLVANSTPMVDFDSRLNSFRVNRERRFDFPTPESPMSTTLKR*

Sequence

>CNT30231532
CATCAAACAACCATTCAAAACGACAGAAAAACCTAGATCTGTCGATCTACAAGGATCAGGAACCAAATCGAGAGGAGGGGGTTAGGGTTTCGGACCTCTC
TTGCCCCGCGGTGTCCCAAATCTGGGCCTTGACGACCTTGTCGTCGACGCGTATGCTCCTGGTGGCGAACTCGACCCCGATGGTGGACTTCGACTCGAGG
CTAAACTCGTTCCGCGTGAACCGGGAAAGGAGGTTCGATTTCCCCACCCCCGAGTCCCCGATGAGCACCACCTTGAAGAGGTAGTCGTAGTCGTCCTCCG
CCCTATACGCCATGCCCCCTCCTCCTCCTCCTCCTCCGCCTCCTCCTCCACCTCCTCCGCCGCCGCCGCTTCCGACGACGCCGACGACGACGACGATGAT
CAGATCCGCGATCCCCCCGCCTCCGTGGGAGCAGCGGATCTCGGGATCGTCGAGAGAGAGAGAGGGAGAGGTGGTGGAGTGGAGGTGGGGAATGAGAGAT
GGGATTAG