Detailed information on CNT30672188


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 2e-65

BLAST vs NONCODE:
NONSLYT003545, E-value = 5e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534974Setaria viridisEucalyptus grandis1429.2294.3771forward
CNT30545709Setaria viridisIpomoea triloba58.5831.883.84297forward
CNT30379145Setaria viridisManihot esculenta46.9452.8989.5238forward
CNT30487977Setaria viridisOlea europaea21.141.1589.72107forward
CNT30125031Setaria viridisPhyscomitrium patens32.5423.0483.64165forward
CNT30560106Setaria viridisActinidia chinensis58.3855.6486.49296forward
CNT30248464Setaria viridisAvena sativa38.2631.8691.75194forward
CNT30607166Setaria viridisGossypium raimondii34.1247.487.28173forward
CNT30621990Setaria viridisCajanus cajan31.9524.4788.89162forward
CNT30332036Setaria viridisDioscorea rotundata36.4958.7387.03185forward

Expression of CNT30672188

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MQCTIFSAFRLWFGGSLGHHDLDKLLIVDLTIAIDISLTDHLVHLLIS*

>peptide 2 (70 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFILRAIRLRNSGKSMVPLPSASTSLIMESYHPRPCRRG*

Sequence

>CNT30672188
TATGCAATGCACAATCTTCTCCGCCTTCAGATTATGGTTCGGTGGCTCACTTGGCCATCATGACCTTGACAAACTCCTCATAGTTGATCTGACCATCGCC
ATCGACATCAGCCTCACGGATCATCTCGTCCACCTCCTCATCAGTTAGCTTCTCACCAAGATTCGTCATGACATGGCGGAGCTCAGCAGCAGAGATGAAG
CCATTTTGGTCCTTGTCAAACACACGGAAGGCCTCCTTAAGCTCTTCCTCTGAGTCGGTGTCCTTCATCTTGCGAGCCATAAGATTGAGAAATTCTGGAA
AATCGATGGTGCCATTGCCATCGGCATCAACCTCATTGATCATGGAATCTTACCATCCCCGTCCTTGTCGAAGAGGCTGAAGGCCTCCTTGAACTCCGCG
ATCTGGTCGTCGGTGAGCTGATCCGCCATGAGCCCGGTGGTGGGAAGGGAGTGGGAAGCGACGGAGGAGGAGGAAGAAAGGCCCGGGGCGTTCAGTGGTG
GCGTGGC