Detailed information on CNT30577739


BLAST search results

BLAST vs Swiss-Prot:
sp|P12357|PSAG_SPIOL, E-value = 5e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520431Oryza barthiiSetaria italica31.3322.5393.85130forward
CNT30250210Oryza barthiiAvena sativa28.6722.3792.44119forward
CNT30666063Oryza barthiiTriticum dicoccoides28.4326.8294.92118forward
CNT3013389Oryza barthiiZea mays31.3329.9593.85130forward
CNT30362701Oryza barthiiSorghum bicolor31.5720.8694.66131forward
CNT30103477Oryza barthiiOryza rufipogon40.2428.2699.4167forward
CNT30581136Oryza barthiiEchinochloa crusgalli31.3321.8995.38130forward

Expression of CNT30577739

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRMIRRSLGCIRCCRWRGCSRRRCGRGSPRRGRRRG*

>peptide 2 (35 aa)
DHQTDKFHAANIHTRLHYCSKLINLFSFLFYPSHT*

>peptide 3 (61 aa)
MWPREPQARTSTRLKPTGSLDRSRETPVLRLITSDGLSSALAATDLLLAGAALNATDGDRTR

Sequence

>CNT30577739
AAGATCATCAAACTGACAAATTTCATGCGGCCAATATACACACGCGATTGCACTACTGTTCCAAATTAATCAACCTTTTTTCTTTTCTTTTTTACCCATC
TCATACATAATCACGTAGAAACACCAGAGATCCATTCAGATTACATTGCATCCATCCAAGATGAGAATGATCAGAAGAAGTTTGGGTTGTATCCGTTGCT
GCAGGTGGCGAGGATGTAGTAGGCGACGATGTGGCCGAGGGAGCCCCAGGCGAGGACGTCGACGAGGTTGAAGCCGACGGGGTCGTTGGACCGGAGCAGG
GAGACGCCGGTGCTCAGGCTGATCACCAGCGACGGGCTCAGCTCCGCCCTCGCCGCCACCGACCTCCTCCTCGCCGGCGCCGCCCTGAACGCCACCGACG
GCGACCGCACGCGCG