Detailed information on CNT30671621


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SYW8|LHCA2_ARATH, E-value = 4e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30658632Setaria viridisTriticum dicoccoides23.9215.0393.1116forward

Expression of CNT30671621

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MTASMARRPLLLGKMGSVLTLPGLMMSAQRRPSAQPMRMSSMMKRVVEEEAETSAMAARACGAGASCVA

>peptide 2 (35 aa)
MRGIARSTQIANSNSSFGGCRWGRCRCTRPETRRP*

>peptide 3 (47 aa)
MSIAFLHWLQHSTNTRSRGMHRSTQAIESSQSIPSHKKEKVASTINL*

Sequence

>CNT30671621
ATATAGCATCTAATGAGTATTGCATTTTTACATTGGTTACAACATAGTACAAATACACGATCAAGAGGCATGCATCGCTCCACACAAGCCATTGAATCAT
CACAGTCTATTCCGTCCCACAAAAAGGAAAAAGTCGCATCGACCATCAACCTATAACAATCTCCACCTCATGCATGCGTGGTATAGCACGCAGCACTCAG
ATCGCTAACTCCAACTCCTCATTTGGGGGTTGTCGATGGGGCCGGTGCCGGTGTACTCGGCCTGAAACCAGGCGCCCATGACGGCGAGCATGGCGAGGCG
GCCCTTGTTGCTGGGGAAGATGGGGTCAGTGTTGACGCTCCCGGGCTTGATGATGTCGGCCCAGCGGCGGCCCTCGGCCCAGCCGATGAGGATGAGCTCG
ATGATGAAGAGGGTGGTGGAGGAGGAGGCGGAGACGAGTGCCATGGCAGCGAGAGCTTGTGGCGCGGGAGCTAGCTGTGTGGCGT