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Detailed information on CNT30567369


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 5e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30653821Actinidia chinensisRosa chinensis33.644.1681.76170forward
CNT3033018Actinidia chinensisTheobroma cacao21.7412.6486.36110forward

Expression of CNT30567369

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RQMQVTSFRSPSLITTFKNSFAFKNSFTEHFT*

>peptide 2 (51 aa)
MKRTVEFLPLSRCQRKRYKSDNHGGSNCNGHHSSKCCSRDKYSNHRKQLEA*

>peptide 3 (60 aa)
MGAATVMVITAASAALGTSIVIIANSWRLNWRWRRWAGVGGILTRLDRVRGLHCNSTFACG

Sequence

>CNT30567369
ATCGACAAATGCAAGTCACATCTTTTAGGTCACCCAGTTTGATTACTACTTTCAAAAACAGTTTTGCTTTCAAAAACAGTTTCACAGAGCACTTCACATA
AAACTCTTTCTGAAAACAAAAACTCTATATCGTGTTCATTTTGATTTAAGAACAATTTTTTTGTGTGTGTTCTGAAAAACAAATCACCAAACCAGTAAAC
AAAAAGATAACAAAAACGATACAAAACAGGACATCTGCAGTAGCATAATTCTGTAAATGAAGAGAACAGTAGAATTCTTACCATTAAGCAGGTGCCAGCG
TAAACGTTACAAATCGGATAATCATGGGGGCAGCAACTGTAATGGTCATCACAGCAGCAAGTGCTGCTCTCGGGACAAGTATAGTAATCATCGCAAACAG
TTGGAGGCTTAATTGGAGATGGAGGAGATGGGCCGGGGTTGGGGGGATTTTGACCCGTCTTGATAGGGTAAGAGGCCTGCACTGCAATTCCACATTTGCC
TGTGGC