Detailed information on CNT30705582


BLAST search results

BLAST vs Swiss-Prot:
sp|P43297|RD21A_ARATH, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513754Prunus aviumJuglans regia75.1789.5981.35327forward
CNT30269299Prunus aviumChenopodium quinoa28.2822.4981.3123forward
CNT30163297Prunus aviumPistacia vera79.5449.7880.92346forward
CNT30651914Prunus aviumRosa chinensis42.0738.8590.16183forward

Expression of CNT30705582

Peptides detected in this lncRNA

>peptide 1 (62 aa)
QAETIINITNGVIIWATVFSSGAANRILIFTATIDEAVVKEFKEATTCLITWTIGEVSAVTW*

>peptide 2 (34 aa)
GRDHHQHHKWGNHLGNSIQFRCSKPHSDIHSNHR*

>peptide 3 (36 aa)
MNSLQSSNLHRLRNRILQPEVHGQCHLDCRSSHHRRF

Sequence

>CNT30705582
CAGGCAGAGACCATCATCAACATCACAAATGGGGTAATCATTTGGGCAACAGTATTCAGTTCCGGTGCAGCAAACCGCATTCTGATATTCACAGCAACCA
TAGATGAGGCAGTAGTCAAGGAATTCAAAGAGGCAACAACATGTCTCATCACTTGGACAATAGGAGAAGTCTCCGCAGTCACTTGGTGAAGGAGAGGGAG
GTGGCGGGGGTGATGACTCTTTGGTAGGATATGAAGCCATGGCATTGATTGCACAAACCCCATATTTTAAATTAGTGTTCCTTCTTATGTAAATGTATCC
ATCTATCCCCCAACTAGTCCCCCATGAATTCTTTACAATCCAGTAATCTTCATCGCCTTCGGAACCGTATCCTACAACCAGAGGTGCATGGTCAATGTCA
TCTGGATTGTCGGAGCAGTCACCATCGTAGATTCC