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Detailed information on CNT3059840


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701273Arabidopsis lyrataQuercus lobata39.9770.3583.62458forward
CNT30377928Arabidopsis lyrataArabidopsis thaliana40.2387.9890.46461forward
CNT3020378Arabidopsis lyrataCitrullus lanatus39.723.9784.4455forward
CNT30235498Arabidopsis lyrataBrassica oleracea42.1554.3387.99483forward
CNT30716995Arabidopsis lyrataMalus domestica golden29.5827.2386.43339forward
CNT30153746Arabidopsis lyrataPrunus persica39.9749.6786.9458forward
CNT30641867Arabidopsis lyrataCannabis sativa39.8874.9283.81457forward

Expression of CNT3059840

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVSELSTSRVMVLPVSVFTKICIWKKKRGQRKNRSANKT*

>peptide 2 (95 aa)
MEGRLLLDVVISKGASIFKLLTGKDKPLLVWRNTFLILNLCLNIVNGVRALNLESNGLASECFHENLHLEKKKRAKKKSISKQNLIDPNHKENRT*

>peptide 3 (42 aa)
MIVLEKTLIFYENRKINQEFEQIQTSKTQDHLRSGNKLTLTR*

>peptide 4 (61 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT3059840
TTTCTAAAGTGCACTTGGATTATTATTGAAATTTGAAACACAAAGGCCCATTAAGAGCCCAACCAAAAGGTTCACAACAAAAAGAACATAAAGAAAACAG
AAAATGAAACATCTACACGATAGGGAAAGTCTTCTTCTTCTGCAGACATCACCACACAAGTGCACGAGCTTTTGACCACAGATCACAAAGCTCAGAAGCT
TCCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATG
AGTCTCTGTTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCGATAGTATCGGAACTTTCAACCTCCAAAGTTATGGTTTTCC
CGGTAAGGGTCTTTACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCAAGGGTGCGTCC
ATCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAG
CTCTCAACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCATCTGGAAAAAAAAAAGAGGGCAAAGAAAAAATCGATCAGCAAACA
AAACTTGATTGATCCTAATCACAAAGAGAATCGCACATGATAGTCCTCGAAAAAACCCTAATTTTCTATGAGAATCGCAAAATCAATCAAGAATTTGAAC
AGATCCAAACCAGTAAAACGCAAGATCACTTAAGAAGCGGCAACAAATTAACCCTAACACGATGAAAACACACACAAAAACTAATTGATGATTGTTCTCA
AAAAAACCCTAAATTTCTAAGACAATTGGACAATCAAACACGAAATTGAACAGAAGTAAGCGAAGAGATTCGGATCAAAAGGTTGGATTTGACGAAACGA
ACATATAATTTTTCGGATCAATTAAACAAAGATTCAAGGAACCAGAATCGGAGATTAGAGGCAAAATCAAAAGAAAACGGATCAGAAGAAACAAGTACCT
TGAAAGAGAGAATCGTAAGAACTTTTGGAAGAGCGATTTATTAGGG