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Detailed information on CNT30701273


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-103

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500521Quercus lobataCoffea canephora69.7462.0285.9454forward
CNT30628664Quercus lobataVigna unguiculata71.5839.1984.76466forward
CNT30171998Quercus lobataTrifolium pratense61.686.0585.04401forward
CNT3059840Quercus lobataArabidopsis lyrata70.3539.9783.62458forward
CNT3024061Quercus lobataPopulus trichocarpa71.4364.2385.38465forward

Expression of CNT30701273

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MASKLITDRQKPKSTNIEILKAMDSNTKSQPSKLRNHHGGEGQGAE*

Sequence

>CNT30701273
TTTAAGATACCACGACCATAACCAAACAACACTAAATTAAAGCAAGTTTAGAACATATTAGGAGCCATTATACAATGGCAAGTAAACTGATAACAGATAG
ACAAAAACCAAAAAGCACCAACATTGAAATACTCAAGGCAATGGACTCGAACACAAAATCACAACCATCCAAGCTTAGAAACCACCACGGAGGCGAAGGA
CAAGGTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGG
GATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAA
ATTTGCATTCCACCTCTAAGCCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGACCATCTTCGAGCTGCTTTCCGG
CAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGAT
GGTCTTGCCAGTGAGTGTCTTAACAAAGATCTGCATCTGTTTCATTCAAAA