« Back to Prunus persica search


Detailed information on CNT30153746


BLAST search results

BLAST vs Swiss-Prot:
sp|P69315|UBIQP_LINUS, E-value = 2e-96

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-127

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616366Prunus persicaSesamum indicum47.945287.33442forward
CNT30562220Prunus persicaActinidia chinensis47.0753.4587.79434forward
CNT3059840Prunus persicaArabidopsis lyrata49.6739.9786.9458forward
CNT30713920Prunus persicaMalus domestica golden44.2575.1493.14408forward
CNT30706353Prunus persicaPrunus avium58.8930.7697.61543forward

Expression of CNT30153746

Peptides detected in this lncRNA

>peptide 1 (45 aa)
FFCHYTHKALLIKIYHTQLFFTSDYFRSTVEVGFFKAQRRQTSSF*

>peptide 2 (61 aa)
MSLCWSGGMPSLSWIFALTLSMVSELSTSKVIVFPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 3 (63 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICSRKTTLNQFCFLGIHKNKTRSWKMID*

Sequence

>CNT30153746
CTTTTTTTTGTCATTATACACACAAAGCACTTCTGATAAAAATTTACCACACTCAACTTTTTTTCACATCTGATTATTTTCGCAGTACAGTAGAAGTAGG
TTTTTTTAAAGCACAACGACGGCAAACTAGCTCTTTTTAAAAGGGCAGCAACGGTAAACTAACCCTTAATCAATTAGTGACGGTGAAATTACATTGGGGG
ATTCTCATTTTTCTTCAACACATTGTCCAAAATCTTTACCTTGCCATTGTCAATGTTATCCGAGCTTTCAACTTCCACACCACCACCACGTAGTCGGAGC
ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGG
GAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCCGAGCTTTCAACTTCCAAGGTGATTGTCTTCCCGGTAAGGGTCTTGACAAA
GATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA
GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGTGA
TGGTCTTGCCCGTGAGGGTTTTCACGAAAATCTGCATCTGTTCACGCAAAACAACCCTAAATCAATTTTGTTTCTTGGGAATTCATAAAAACAAAACAAG
ATCTTGGAAAATGATTGATTAAGTCAGACAGAATTGAAAATTATTTTATAGACCTTGAAGATCGTGAATCATTTCATTCAGATCTTTGATTATTAACAAC
AATAAGCTAACAATTTCATCAG