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Detailed information on CNT30716995


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-100

BLAST vs NONCODE:
NONMTRT002042, E-value = 5e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059840Malus domestica goldenArabidopsis lyrata27.2329.5886.43339forward

Expression of CNT30716995

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSNVIIFPVNCK*

>peptide 2 (61 aa)
MSLCWSGEIPSLSWIFAFTLSMVSELSTSKVMVFPVSVLTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT30716995
GAAATTTCAACGCAAACGGAAACGGAAACCCAGCAGATGCATATCAAAGTACTTTAATTCATTAACTACATAGTATTAGGGTGACCCATCTATTGGTCAA
AGTTGGAGTACGAAATCCAAAACCAAAGTTTAACCGTTCCCTGATCAGTGAAGGATGAGATCACAAGCATCACTCAGAATTCAGAAACCATCACGGAGGC
GAAGGACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCTTCCTCCAGCTGCTTACTGGCAAAGACGATGAGTCTCTGCTG
GTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCTTTCACATTATCAATGGTATCGGAACTCTCTACCTCCAACGTTATCATCTTCCCAGTCAATTGC
AAGTAAACAAATTACTTATATTACACTCACAAAATATTACAACTTAACAACAACTCTCAAGAACACAACTTAGAAGCTATGACACTCTTTCTGTAGACAC
ACTCTAGACCACTCACACTCTTCACAAGACCACCCTCACTTCTAAGTTATTTTCTTGCTTCTCTTCTTGGCTACTTGGTTGTATTACAACACTCATGGCC
ATGATCATGCACACACCCTTCCACCGACTTAAGAAACAACCTTCCAGTCCTTTCTTTCTACAAAGGACTACTTAGCTTAGATAATTCTATATTTCATGTT
TCTTCACGGATCACCTTCCATGCATATTTGAACTAGAAAAATCTAATTTAATTGTATCACAATTTTCAACTTCCAGAGTGATGGTCTTCCCGGTCAAGGT
CTTCACGAAGATTTGCATACCACCACGCAGTCGAAGCACCAAGTGGAGAGTCGATTCCTTTTGAATGTTATAATCGGCAAGCGTGAGACCATCCCCAAGC
TCAAGCTGCTTACAAGCGAAGATGAGCCTCTGCTGGTCTGGGGAAATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCAATGGTATCCGAGCTTT
CAACTTCCAAGGTGATGGTCTTTCCGGTAAGCGTCTTGACAAAGATTTGCATACCACCACGAAGACGAAGCACCAGGTGGAGAGTGGACTCCTTCTGGAT
GTTGTAGTCAGCGAGTGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCT
TTGACATTATCAATTGTGTCAGAGCTTTCAACCTCGAGGGTGATG