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Detailed information on CNT30235498


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 9e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377928Brassica oleraceaArabidopsis thaliana51.7487.7986.52460forward
CNT30201348Brassica oleraceaPisum sativum51.6342.2384.1459forward
CNT30591037Brassica oleraceaMusa acuminata45.7833.3385.26407forward
CNT3059840Brassica oleraceaArabidopsis lyrata54.3342.1587.99483forward

Expression of CNT30235498

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MERRLLLDVVIRKSATILKLFPSEDESLLVWWDPFLVLDLRLDIVYCV*

>peptide 2 (58 aa)
MSLCWSGGIPSLSWIFALTLSIVSELSTSKVMVLPVRVLTKICIPPRRRSTRWSVDSF*

>peptide 3 (50 aa)
MSLCWSGGMPSLSWILALTLSIVSELSTSRVMVLPVRVFTKICICTQRET*

Sequence

>CNT30235498
GAGTTGATAATGCACTTTGGATTATTATTTAACCTTCAAACATAAAGGGGCATTACGAGCCCAACCGAAAGGTTCACAACGAAAAGAAAATAAAGAAAAA
AACATAAAATGAAACAAACATTGACACAGACGATCCATTTTTGCAGAAGCAAACAGAGATCAACTCCCAAAGTGCATTAATAAAAGCTCAAAGAACACCA
CTTTTTGACCACACACACAGATCAACAAGCTCAGAAGCTTCCACCACGAAGACGAAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCA
AGAGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTA
TTGTGTCTGAGCTTTCAACCTCCAAAGTAATGGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGCATACCACCGCGGAGACGAAGCACGAGGTGGAGCGT
AGACTCTTTCTGAATATTGTAGTCAGCGAGCGTGCGCCCATCCTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTG
TCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCGGAGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTTAGAGTTTTCACGAAAATTTGCATCTGCA
CACAAAGAGAGACGTAAGAGCTAGCGACTTAGGGTTTCCTAGGGATGATTTCGATTTATTAGATTCGTCGCAAGAAGATCTTTCTTTATATAAAGCCGAG
GTTGTTAAGAAAATGTTAAATATCAATTTGAGAAAATCTATTCAAATTAAAATTAGCATTTAAAATAATTAGACACGCGGCAATTTCTA