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Detailed information on CNT30377928


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235498Arabidopsis thalianaBrassica oleracea87.7951.7486.52460forward
CNT3059840Arabidopsis thalianaArabidopsis lyrata87.9840.2390.46461forward

Expression of CNT30377928

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRHEPTTYHQITKSLEASTTKTKNQVKSRLLLDVVICKCATILKLFSSEDESLLVWWDPFLVLNLSLDIIDGV*

>peptide 2 (31 aa)
MVSELSTSRVMVFPVRVFTKICIPPRRRSTR*

Sequence

>CNT30377928
GTGAAATAGATCACCTCCCAAGTGCATGAGACACGAACCAACCACTTATCATCAGATCACAAAAAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAA
GTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCAAGTGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATC
CCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATGGTGTCTGAGCTTTCAACCTCCAGAGTAATGGTCTTTCCGGTAAGGGTCTTCACAAAGATCT
GCATACCACCACGGAGACGAAGCACAAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA
TATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTC
TTGCCAGTGAGTGTTTTCACGAAG