« Back to Echinochloa crusgalli search


Detailed information on CNT30583932


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519692Echinochloa crusgalliSetaria italica43.5945.1489.56316forward
CNT30459122Echinochloa crusgalliSaccharum spontaneum24.2832.3590.91176forward
CNT308251Echinochloa crusgalliZea mays26.3440.9991.62191forward
CNT30352780Echinochloa crusgalliEragrostis tef15.7221.3188.6114forward
CNT30364968Echinochloa crusgalliSorghum bicolor30.2137.1887.21219forward
CNT30592774Echinochloa crusgalliEragrostis curvula17.9339.1686.15130forward

Expression of CNT30583932

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHLQFCLVRHQLLLIVLLDFGPVPLQHVQP*

>peptide 2 (32 aa)
PLRNRLLGTTPGSGRLLCTLKPGLPVLPGPLT*

Sequence

>CNT30583932
CCTCTGCGTAACAGATTGCTGGGCACGACCCCTGGCAGCGGCAGGTTGTTGTGCACGTTGAAACCTGGTTTGCCTGTTTTGCCTGGCCCTCTCACTTAAG
TTGATTGTTCTGGAACGAGTTTCAGGGGCCTCCACTACAGTACTGGTATTCCTCTGTTCAGAAGGTGCACCAGGTTGGACTGGGTTAGGGGAAGGTTCCC
GTGTCTCTCTTGTAGTGCTGCTATTCTGAGGTCGAGAAGATGCACCAGCTTGGACTGGATTAGGGGAAGGTTCACGAGCAGGAGATGCATCTGCAGTTCT
GCTTGGTGAGGCATCAGCTGCTCCTGATTGTGCTACTGGACTTTGGTCCGGTTCCACTGCAGCATGTTCAGCCGTAGTATCACCCTCAATCTCTGACATA
TCAACATCACCAGCTTGCTCACCAATATCCGAAGGAGGAGGCTCCCTATTGGTTTCTCCAAGTGCAGTTTCTAAAGGTTGTTCAGGTTCCTCTGGCAACT
CTCCCTCCTCCATCTCATCATCAGCATCAGTTGCAATAGTAAGCTGAGCATCTTCCTTTGAATCTTCAATTTTCTGCTCCTCCTCAAATGATTCAATTAA
AGCCTCCGACTTTGCCAGCACATCTTCTACGGGAATTGCATTTATCTCAATATTAACATCAGCATCAGAGCCTTTGATGTCCATTGATGCATCCAAATGT
GCTCCAGAGTCATCTTTATCACCCA