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Detailed information on CNT30459122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519692Saccharum spontaneumSetaria italica36.9528.7186.07201forward
CNT308251Saccharum spontaneumZea mays59.5669.5393.83324forward
CNT30352780Saccharum spontaneumEragrostis tef23.924.385.38130forward
CNT30364968Saccharum spontaneumSorghum bicolor94.1286.9394.53512forward
CNT30583932Saccharum spontaneumEchinochloa crusgalli32.3524.2890.91176forward
CNT30592774Saccharum spontaneumEragrostis curvula23.939.1683.85130forward

Expression of CNT30459122

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LVQIAGHDPEQQQVVVHFETWLAYFVWPFRS*

Sequence

>CNT30459122
CCTTAGTACAGATTGCTGGCCACGACCCCGAGCAGCAGCAGGTTGTTGTGCACTTTGAAACCTGGCTTGCCTATTTTGTCTGGCCCTTTCGAAGTTGATT
GTTCTGGTGTTCCGCTGTTCAGAAGACGCACCGGCTTGGGCTGGATTAGTTGAAGGTTCACGTGCAGGAGATGCATCTGCAGTTCTGCTTGGTGAGGCAT
CAGCTGCACCAGATTGTGTTATAGGACTTTGGTCTGGTTCCACTGCAGCACGCTCAGCTGTAGTCTCACCCTCAATCTCTGACATATCAACATCACTCTT
CTCTTCAGGTTCCTCTGCCAACTCTCCCTCCTCAATGTCATCATCAACATCAGTTGCAGTAGTAAGCTGAGCATCTTCCTTCGAATCTTCTGTTTTCTGG
TCATCGTCAAACGATTCAATTACTGCCTCTGACTTTGCCACCACAGGCTCATCTTCAACGGGAGTTACATTTGTGTCAATATTAACATCAGCATCCTGGC
CTTTGATGTCCATCGATGCATCACCAGATTCATCTTTATCACCC