Detailed information on CNT30364968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519692Sorghum bicolorSetaria italica46.5239.1483.21274forward
CNT30459122Sorghum bicolorSaccharum spontaneum86.9394.1294.53512forward
CNT308251Sorghum bicolorZea mays55.0169.5391.36324forward
CNT30352780Sorghum bicolorEragrostis tef19.1921.1287.61113forward
CNT30583932Sorghum bicolorEchinochloa crusgalli37.1830.2187.21219forward
CNT30592774Sorghum bicolorEragrostis curvula21.2237.6583.2125forward

Expression of CNT30364968

Peptides detected in this lncRNA

>peptide 1 (56 aa)
PECNRLPTTPSSDRLLCTSSRLLWTLKPGLPILPGPFKVDCSGVPLFRSSCLGWIS*

>peptide 2 (37 aa)
MVIAFVSILTSASWPLMSIEASPESSLSPTSSSLVASA

>peptide 3 (41 aa)
MLIFYGNCICVNINISILAFDVHRSISRVIFITHILLPCCLS

Sequence

>CNT30364968
CCTGAGTGTAACAGATTGCCCACGACCCCGAGCAGCGACAGGTTGTTGTGCACCAGCAGCAGGTTGCTGTGGACGTTGAAACCTGGCTTGCCTATTTTGC
CTGGCCCTTTCAAAGTTGATTGTTCTGGTGTTCCGCTGTTCAGAAGCTCCTGCTTGGGCTGGATTAGTTGAAGGTTCACGTGCAGGAGATGCATCTGCAT
TTCTGCTTGGTGAGGCATCAGCTACACCAGATTGTGTTATAGGACTTTGGTCTGGTTCCACTGCAGCACGCTCAGCTGTAGTTTCACCCTCAATCTCTGA
CATATCAACATCACTCTTTTCTTCAGGTTCCTCTGGCAACTCTCCCTCCTCCATGTCATCGTCAACATCAGTTGCAGTAGTAAGCTGAGCATCTTCCTTT
GAATCTTCTGTTTTCTGGTCATCGTCAAATGATTCAATTACTGCCTCTGACTTTGCCACCACATGCTCATCTTCTATGGTAATTGCATTTGTGTCAATAT
TAACATCAGCATCCTGGCCTTTGATGTCCATCGAAGCATCTCCAGAGTCATCTTTATCACCCACATCCTCCTCCCTTGTTGCCTCAGCC