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Detailed information on CNT30519692

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30459122	Setaria italica	Saccharum spontaneum	28.71	36.95	86.07	201	forward
CNT308251	Setaria italica	Zea mays	40.43	60.73	86.93	283	forward
CNT30352780	Setaria italica	Eragrostis tef	16.29	21.31	89.47	114	forward
CNT30364968	Setaria italica	Sorghum bicolor	39.14	46.52	83.21	274	forward
CNT30583932	Setaria italica	Echinochloa crusgalli	45.14	43.59	89.56	316	forward
CNT30592774	Setaria italica	Eragrostis curvula	18.57	39.16	81.54	130	forward

Expression of CNT30519692

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MMHPHVLQSHLYHPCHHPLLPQPLPLVWMPDQ

>peptide 2 (29 aa)
MRQQLCLVNQQFLIVLPDFGLVPLQHVQP*

Sequence

>CNT30519692
TTGTGCACGTTGTTGAAACCTGGTTTGCCTATTTTGTCTGGCCCTCTCAGTTAAGTTGATTGTTCTGGAACGAGTTTCAGTAGCCTCTGTTACAGTACTG
GTATTCCGTGGTTCAGAAGATGCACCAGCTTGGGCTGGGTTAGAGGAAGGTTCACGTGCGGGAGATGCGTCAGCAGCTCTGCTTGGTGAATCAGCAGTTC
CTGATTGTGCTACCGGACTTTGGTCTGGTTCCACTGCAGCATGTTCAGCCGTAGTATCACCCTCAACCTCTGACACATCAACATCACTCTTCTCTGTCAG
CATTCCTGGAGATGCTGCCCTGAAAACATTCCCAGCTTGCTCACCAATATCCGAAGTAGGCTCCCTATTAGTTTCTCCAAGTGCACTTTCTAAAGGTTGT
TCAGGTTCCTCCGGTAACTCTCCCTCCTCCATCTCATCGTCAACATCAGTTGCAGTAGTAAGCTGAGCATCTTCCTTCAAGTCTTCAATTTTCTGGTCAT
CATCAAATGATTCAACTAATGCATCTGACTTTGCCAGCACATCTTCTACGGGAACCGCGTTTATTTCAATACTAACATCAGCATCCTGGCCTTTAGTGTC
CAATGATGCATCCACATGTGCTCCAGAGTCATCTTTATCACCCATGTCATCATCCTTTGTTGCCTCAACCTCTTCCATTGGTGTGGATGCCTGATCAGCG