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Detailed information on CNT30459402


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DZE0|PAL2_ORYSJ, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671225Saccharum spontaneumSetaria viridis25.7132.492.91127forward
CNT30178786Saccharum spontaneumSecale cereale41.330.1380.88204forward
CNT30552886Saccharum spontaneumOryza glaberrima37.2528.5389.67184forward
CNT30583892Saccharum spontaneumEchinochloa crusgalli48.9941.0289.67242forward
CNT30592972Saccharum spontaneumEragrostis curvula19.2326.1791.5895forward

Expression of CNT30459402

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MGSGSPFHSLRHSSSGSMCLPWLMARSTLLSSSPGERVFSPVRYTAPSSSRTNRYSG*

>peptide 2 (56 aa)
MIHILKNIQVTACNNNLFNHPQDLAQSRLWLWPCSCITRIRSISTNINKLGIKTIS*

Sequence

>CNT30459402
GTTTGCATTAACACATGGATTGAATTAAACTGAAAATATGATTCACATATTAAAAAACATACAAGTTACAGCTTGCAACAACAATTTGTTCAATCACCCA
CAAGACCTTGCTCAAAGCAGGTTATGGTTATGGCCTTGCAGCTGTATAACAAGAATCCGTAGCATATCAACGAACATAAACAAATTAGGAATAAAAACCA
TTAGCTAAAAACACAGCCTTCTGCTGCTTGTATCAACTCTGTTCAACAGATGGGCAGTGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCAGCGGGTCG
ATGTGCTTGCCCTGGTTGATGGCAAGGAGCACCTTGTTGAGCTCCTCGCCGGGAGAGCGCGTCTTCTCGCCGGTGAGGTACACGGCTCCGAGCTCCTCGC
GCACGAACCGGTACAGCGGGTAGGAGCGGCACTCGGTGATTCTCTTTGGTATCGCTGCCGTGCCGTTCTCGACAGCCGCCCGTGCAGCCTCCAC