Detailed information on CNT30178786


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 1e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670711Secale cerealeSetaria viridis18.9129.6382.03128forward
CNT30383196Secale cerealeTriticum turgidum28.6647.7893.81194reverse complement
CNT30552886Secale cerealeOryza glaberrima20.9722.0281.69142forward
CNT30435636Secale cerealeAegilops tauschii44.0243.1993.29298forward
CNT30244105Secale cerealeAvena sativa65.1426.8187.3441forward
CNT30459402Secale cerealeSaccharum spontaneum30.1341.380.88204forward
CNT30135526Secale cerealeLolium perenne39.4431.2688.01267forward
CNT30583892Secale cerealeEchinochloa crusgalli29.2533.5683.84198forward

Expression of CNT30178786

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MQLQFLATKWQLCKNVPAYKTSIFKKIQLEKYYHLSAKKFQGLLHIVFFSGS*

>peptide 2 (81 aa)
LKKDQYIYHTQYPSNLHQRLYKLCSCNFWQQNGSSVRMFQLTKHQFLRKYNWKNIIIYQLKSSKAFCTLSSFQALDPLFSR*

>peptide 3 (68 aa)
MSGQPQPPLVALHGAPAQTRQAWQTPTSPHRARPHRWPRHARREPHASSASVGSWSCKGHLHTRTPPHG

>peptide 4 (28 aa)
MLDENRTHLLHQWVVGAARVICIREHRLT

>peptide 5 (37 aa)
MCLPWFMATNTLSTSSPGDRVFSPVKYSVPSSLRTNL*

Sequence

>CNT30178786
TTCTAAAAAAAGACCAGTATATTTATCATACGCAGTACCCTTCTAACTTACATCAGAGGTTGTACAAGTTATGCAGTTGCAATTTTTGGCAACAAAATGG
CAGCTCTGTAAGAATGTTCCAGCTTACAAAACATCAATTTTTAAGAAAATACAATTGGAAAAATATTATCATTTATCAGCTAAAAAGTTCCAAGGCCTTC
TGCACATTGTCTTCTTTTCAGGCTCTTGATCCTCTGTTCAGCAGATAGGCAAGGGTTCACCGTTCCACTCTTTTAGGCACTCCAGCAGCGCGTCAATGTG
CTTGCCCTGGTTCATGGCGACAAACACCTTGTCCACCTCTTCCCCAGGAGACCGTGTCTTCTCCCCAGTCAAGTACTCAGTCCCAAGCTCCTTGCGCACG
AACCTGTAGAGCGGGTATGACCGGCATTCGGTGATACGGTTCTGCTGCGTGGCGTTGCCGTTCTCCACGGATGTCCGGGCAGCCTCAACCTCCTTTGGTA
GCACTGCACGGAGCTCCTGCTCAAACGCGGCAAGCTTGGCAAACACCGACGTCTCCACATCGTGCTCGGCCTCACCGTTGGCCAAGGCATGCTCGACGAG
AACCGCACGCATCTTCTGCATCAGTGGGTAGTTGGAGCTGCAAGGGTCATCTGCATACGCGAACACCGCCTCACGGT