CANTATAdb - search

Detailed information on CNT30576752

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L5C6|XIP1_WHEAT, E-value = 1e-111

BLAST vs NONCODE:
NONORUT005672, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671543	Oryza barthii	Setaria viridis	4.27	26.98	89.66	58	forward
CNT30221338	Oryza barthii	Hordeum vulgare	18.64	74.85	91.3	253	forward
CNT30553989	Oryza barthii	Oryza glaberrima	33.53	63.02	99.56	455	forward
CNT30453711	Oryza barthii	Saccharum spontaneum	56.89	60.55	86.92	772	forward
CNT30136854	Oryza barthii	Lolium perenne	43.63	45.05	85.81	592	forward
CNT30150723	Oryza barthii	Brachypodium distachyon	7.44	22.44	92.08	101	forward

Expression of CNT30576752

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MESDTGTPMNWQCLMSSPMPAMGCPERSRLYLPCPYTLRKDMMTMV*

>peptide 2 (58 aa)
TIVLCETINIARKMLEIEYFIVNWVIHIMFILHFYYVALITVYSSLYSFLQAQMHTRT*

>peptide 3 (45 aa)
MLCLASSSASTSYLSAGVPCSRNRSTPSSHASPKGRYTPALDPPK*

Sequence

>CNT30576752
GACTATCGTTTTGTGCGAGACCATAAATATAGCCAGGAAAATGCTCGAGATTGAGTACTTTATTGTCAACTGGGTCATACATATAATGTTTATTCTCCAC
TTTTATTATGTAGCCCTAATAACTGTTTATTCTTCACTTTATTCTTTCTTGCAAGCACAAATGCATACACGGACATAGACGAGGTGGAGGATAGGCGATT
GACAGACAGAGTATTCGACAGACAGAGTTTGTAGTAGCCAGTGATGCTGCTTGGCCTACTGGCACGGATGGGAGAAGTCGATCACGATCAGATGAGGCTC
AAGCATAGGCCTTGACCATGCTGGTGTAGTTGCTCAGCTTGTCGTAGTATCGGTCCCAGATCATGAAGCCGCCGTAGTTGTCCGCCTTCTGCGTGGACGG
GGCGACGTCGTAGTAGACGTTCTTGGGGTGCACCCACCCGTGCGTCATCTCCGATGCCGTCATCCCCACGTAGAACCGCCTCGCAGTTGTCGTCGTCGTA
GATCCGGATGTGGATGCGCTCGAAGATCCCCGTCGCCACAGCGCGGCCGAGGTAGCTGCTGGGCGGGAACGTGCACCGCGGCGTCGCTGTCAGGTGCAGC
GGCTTCCCGGGCGCGCCGCGGATGTTGTGCTTGGCGAGCTCCAGCGCCAGCACGTCGTACCTGTCCGCGGGCGTGCCGTGCTCCAGGAACAGGTCGACGC
CGTCGAGCCACGCGTCGCCGAAAGGGCGGTACACGCCCGCCTTGGACCCGCCGAAGTAGGCGTTCCAGAGGTAGTCGAAGAGCTCGAGCGCCGATCGGTT
GGACGGCAGCGAGTAGCCGTTGCCGAAGCCGCCGATGGAGAGCGACACCGGGACGCCGATGAACTGGCAGTGCTTGATGTCGTCGCCGATGCCGGCTATG
GGGTGTCCCGAGAGGTCGAGGTTGTACTTGCCGTGTCCGTACACGTTGAGGAAGGACATGATGACCATGGTGTAGAGCCCGGAGTCGCAGGCCTCGCGGA
GGGTGCCCTCGTCCTTGTTCCGGCCCCAGAAGACGGTCACCTGGCCGGTCTTCCCCACGGCCGTGGCCGGGCCGGCGAGGAAGACGGCAGCAATGGCCGC
GACGGCCAGGAGGGAGGCTGCCCTCCTGCTTGCGAGCTCCATTATTATTTCTGCTGGATCGATGAATTCTTGTTAACTAATTTGCGCTTACCACTGGCTT
GATTGATGGTATATATAGATTTTTGAGAGATGGAGAAGTAGAATTCAGGCACCGCTAGCTACGCTAACAGATTGTTGACCACGGCATATTTTGTCAGCTA
GCTTTTGCTGCTGGCACTTTCCTTCTCTTCTCCGCGTTGGAGTGGAAGTAGCCAGAG