Detailed information on CNT30553989


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L5C6|XIP1_WHEAT, E-value = 4e-46

BLAST vs NONCODE:
NONORUT005672, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671543Oryza glaberrimaSetaria viridis8.0326.9889.6658forward
CNT30221338Oryza glaberrimaHordeum vulgare16.6235.590120forward
CNT30453241Oryza glaberrimaSaccharum spontaneum62.3341.2587.11450forward
CNT30150723Oryza glaberrimaBrachypodium distachyon25.3540.6780.33183forward
CNT30576752Oryza glaberrimaOryza barthii63.0233.5399.56455forward
CNT30580659Oryza glaberrimaEchinochloa crusgalli26.7313.9879.79193forward

Expression of CNT30553989

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MPSSPRRTASPGTPPSTCPTPGASRPRSCRRRRSGCGCARRSPSPQRGRGSRRARAPIGWTAASSRCRSRRWRATPGRR*

>peptide 2 (48 aa)
ARKMLEIEYFIVNWVIHIMFILHFYYVALITVYSSLYSFLQAQMHTRT*

Sequence

>CNT30553989
TAGCCAGGAAAATGCTCGAGATTGAGTACTTTATTGTCAACTGGGTCATACATATAATGTTTATTCTCCACTTTTATTATGTAGCCCTAATAACTGTTTA
TTCTTCACTTTATTCTTTCTTGCAAGCACAAATGCATACACGGACATAGACGAGGTGGAGGATAGGCGATTGACAGACAGAGTATTCGACAGACAGAGTT
TCTAGTAGCCAGTGATGCTGCTTGGCCTACTGGCACGGATGGGAGAAGTCGATCACGATCAGATGAGGCTCAAGCATAGGCCTTGACCATGCTGGTGTAG
TTGCTCAGCTTGTCGTAGTATCGGTCCCAGATCATGAAGCCGCCGTAGTTGTCCGCCTTCTGCGTGGACGGGGCGACGTCGTAGTAGACGTTCTTGGGGT
GCACCCACCCGTGCGTCATCTCCGATGCCGTCATCCCCACGTAGAACCGCGTCGCCGGGTACGCCGCCGTCCACTTGTCCCACGCCAGGTGCCAGTAGGC
CTCGCAGTTGTCGTCGTCGTAGATCCGGATGTGGATGCGCTCGAAGATCCCCGTCGCCACAGCGCGGCCGAGGTAGTCGAAGAGCTCGAGCGCCGATCGG
TTGGACGGCAGCGAGTAGCCGTTGCCGAAGCCGCCGATGGAGAGCGACACCGGGACGCCGATGAACTGGCAGTGCTTGATGTCGTCGCCCATGCCGGCTA
TGGGGTGTCCCGAGAGGTCGAG