Detailed information on CNT30221338


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L5C6|XIP1_WHEAT, E-value = 7e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553989Hordeum vulgareOryza glaberrima35.516.6290120forward
CNT30453194Hordeum vulgareSaccharum spontaneum75.7427.4788.67256forward
CNT30136854Hordeum vulgareLolium perenne75.7419.4893.36256forward
CNT30150723Hordeum vulgareBrachypodium distachyon29.8822.4491.09101forward
CNT30576752Hordeum vulgareOryza barthii74.8518.6491.3253forward

Expression of CNT30221338

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MERETGTPLNWQCLMSAPTEDRGRRHAGLQGGSGAIFGFST*

>peptide 2 (89 aa)
QLQRQHVVAVRRCAVLQEEVDAVEPRVAERAGDARLGPAEVGVPEVVEEVERRSVGWERVAGAVAADGEGDGDALELAVLDVGADGGQG*

>peptide 3 (75 aa)
PAPAPARRSGPPVCRAPGRGRRRRATRRRKGGGRPAWTRRSRSSRGGRRGRAPIGWMGASSRCRSRRWRGRRGRP*

Sequence

>CNT30221338
GCCAGCTCCAGCGCCAGCACGTCGTAGCGGTCCGCCGGTGTGCCGTGCTCCAGGAAGAGGTCGACGCCGTCGAGCCACGCGTCGCCGAAAGGGCGGGGGA
CGCCCGGCTTGGACCCGCCGAAGTAGGAGTTCCAGAGGTGGTCGAAGAGGTCGAGCGCCGATCGGTTGGATGGGAGCGAGTAGCCGGTGCCGTAGCCGCC
GATGGAGAGGGAGACGGGGACGCCCTTGAACTGGCAGTGCTTGATGTCGGCGCCGACGGAGGACAGGGGTAGGAGGCACGCTGGCCTCCAGGGTGGGAGC
GGCGCCATTTTTGGTTTCTCCACGTAGCTAGTAGCTTT