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Detailed information on CNT30136854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L5C6|XIP1_WHEAT, E-value = 6e-174

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221338Lolium perenneHordeum vulgare19.4875.7493.36256forward
CNT30453711Lolium perenneSaccharum spontaneum43.0744.3983.57566forward
CNT30576752Lolium perenneOryza barthii45.0543.6385.81592forward

Expression of CNT30136854

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLCLASSSASTSYRSAGVPCSRKRSTPSSHASPNGRGTPGLEPPK*

>peptide 2 (29 aa)
METGTPMNWQCLMSAPMALRSWPERSRWW*

>peptide 3 (38 aa)
MSSLPCSACWCEESALSSPLFIGRDEVAGDVKSKQLAS*

Sequence

>CNT30136854
TAGTATTAGGGGAAGGCCAACATTTTGTTTCGGGTTTTTTTAGCTAACTTTTTTCTTTCCTTAAATGGCGCGGGCTTTATTAATTTTAAATCTGACAACT
CATGTCTTTTATCTAAAACCAGAGGATTAAACCATAACCTGTATATTCACAGGTCTCACTTTATTCTTACAATTACCACAAACACCACAATTTATTGTTA
CACCACTAGGAAACGACGCGATGCAGGATGTAGCTGAGTAGCTCAAGCGTAGCTCTTGATCAAGCTACCGTAGTCGTCGCTCTTCTTGTCGAAGTACCTG
TCCCAGAGCATGATTCCGCCGTAGTTGTCCTTCTTCTGCACCACGGGCGCGACGCCGTAGTAGACGTTCTTGGGGTGTATCCACTGGTACGAGTTCTGGT
CCGCCGTGAGGCCGATGTAGAACCTGGTGGCCGGATACGCCGCCGTCCACTTGTCCCACGCGTCCTGCCACGCCCCGTACACGTTGCACGCCTTGTCGTC
CCCCTCGTAGATCCTGACGTGGACGCGCTCGAAGATCCCCGTCGCCAGCGCCCGCCCGACGTGCGCCGCCGGTGGGTACGCGCACCGGACCGTCGCCGTC
AGGTGCAGCGGCTTGCCCGGCCCGCCGCGGATGTTGTGCTTGGCCAGCTCCAGCGCCAGCACGTCGTACCGGTCCGCGGGCGTGCCGTGCTCGAGGAAGA
GGTCGACGCCGTCGAGCCACGCGTCGCCGAACGGGCGGGGCACGCCGGGCTTGGAGCCCCCGAAGTAGGAGTTCCAGAGGTGGTCGAAGAGGTCGAGCGC
GGAGCGGTTGGACGGGAGCGAGTAGCCGGTGCCGTAGCCGCCGACGGAGATGGAGACGGGCACGCCGATGAACTGGCAGTGCTTGATGTCGGCGCCGATG
GCGTTGAGGTCGTGGCCGGAGAGGTCGAGGTGGTGGTAGTTGCCGTGGCCGAAGACGTCGAGGAAGGAGATGACGGCGATGGTGTAGGTGCCGGTGTCGC
AGGCCTCACGCAGGGAGCCCTCGTCCTTGTTCCGGCCCCAGAAGACGGCCACCTGGCCGGTCTTCCCCGTCGCCGCGGCCGGGACGGCGAGGAAGGTGGC
GGCGAAGAGGAGGGCCCCGAGGAGGAGCATCACGGAGGCTGGCTTACAGCTTGCGATCGCCATCGGTGGTGGATGGATGAGTTCTCTTCCTTGCTCGGCT
TGTTGGTGTGAAGAATCAGCTCTATCGAGTCCACTATTTATAGGAAGAGATGAAGTAGCAGGAGATGTGAAATCGAAGCAGCTAGCTAGCTAGCTGTAAT
TGACGACTACTGGC