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Detailed information on CNT30453711


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L5C6|XIP1_WHEAT, E-value = 5e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30136854Saccharum spontaneumLolium perenne44.3943.0783.57566forward
CNT30576752Saccharum spontaneumOryza barthii60.5556.8986.92772forward

Expression of CNT30453711

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MESDTGTPTNWQCLMSSPMPAIGWPDRSRWYLPLGPYTSRNDMMTMV*

>peptide 2 (44 aa)
MAGPARETRATAMARRAAADALLRPPSAAIAGSIDAFFLLLLAY*

>peptide 3 (51 aa)
MLCLASSSASTSYRSAAALPCSRNRSTPSSHASPKGRCTPGLDPPKKAFQR*

>peptide 4 (29 aa)
MLVGKKLVVDRDSSDADAACMSELRNHQA*

Sequence

>CNT30453711
GTTGCATCTCTCTCATCACCTCGGTGTCTCCTCTTCTCGATCAAAGTTAAAGAGTTTGACTAACCCAAAAATTTAAAATTGTATTCTTTTTAGACAGATG
GAGTACAAATTACAAGATCTCAATTACGTTCATCACTGACACAAACTTCAAAACTTTTAAACTGTTTATTTATTTATTCATCACTTTATTCCTTCTTGCA
AAATGCAAACACACTACACACCACCACAGTGATGACTGTATTTTATTTTACAGATATAGTAGTACTACTATGCTGGTCGGGAAGAAACTAGTGGTTGACA
GGGACAGTAGTGATGCTGACGCAGCATGCATGTCTGAACTGAGAAATCATCAAGCATAGTACTTGACCATGCTTGTGTAGTTGGAGAGCTTGTCAGCGTA
GCGGTCCCAGATCATGAACCCTCCGTAGTTGTCTGCCTTCTGCACGGACGGCGCGACGTCGTAGTAGACGTTCTTGGGGTGCACCCAGCCGTGCGTCATC
TCCGACGCCGTCAACCCCACATAGAACCTGGTGCCAGTACGCCTCGCAGTCGGCGTCGTCGTAGATCCTGACGTGGACGCGCTCGAAGATCCCCGTGTCC
AGCGCCCTCTTCAGGTAGCCCGCCGGCGGGAACCCGCAGCGCGGCGTCGCCGTCAGGTGCAGCGGCTTCCCGGGCCCGCCGCGGATGTTGTGCTTGGCGA
GCTCCAGCGCCAGCACGTCGTACCGGTCCGCCGCCGCGCTGCCGTGCTCCAGGAACAGGTCGACGCCGTCCAGCCACGCGTCGCCGAAGGGGCGGTGCAC
GCCCGGCTTGGACCCGCCGAAGAAGGCGTTCCAGAGGTAGTCGAAGAGGTCCAGCGCCGCTTTTTTGGAGGGGAGAGAGTAGCCGGAGCCGAAGCCGCCG
ATGGAGAGCGACACCGGGACGCCCACGAACTGGCAGTGCTTGATGTCGTCGCCGATGCCGGCGATCGGGTGGCCCGACAGGTCCAGGTGGTACTTGCCGT
TAGGGCCGTACACGTCGAGGAACGACATGATGACCATGGTGTAGAGGCCCGAGTCGCAGGCCTCCCGGAGCGTGCCCTCGGCTTTGTTCCGGCCCCAGAA
CACGGTCACCTGCCCGGTCTTATTCCCCGCCGCCATGGCTGGCCCGGCGAGGGAGACGAGGGCCACTGCCATGGCTAGGAGGGCGGCTGCTGACGCCCTC
CTCCGTCCTCCGAGCGCCGCCATTGCTGGATCGATCGATGCTTTCTTCCTGCTCTTGCTTGCTTACTAGTACTGG