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Detailed information on CNT30580659


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7GCM7|XIP1_ORYSJ, E-value = 9e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672181Echinochloa crusgalliSetaria viridis4.7832.295.4566forward
CNT30553989Echinochloa crusgalliOryza glaberrima13.9826.7379.79193forward

Expression of CNT30580659

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MGGSSGCCCRRGRRWRGRASCSWSGSSRCRRRRGRWGGRRGRGGACRGRRR*

>peptide 2 (47 aa)
VLYQSAPTLKLVPRCNVQGYRLKLSTGEKNPLLNRQYHQKYIAQDIL*

>peptide 3 (51 aa)
MSAPTRPMGWPERSRRGLPWPKTLRQGRTHVRPSEPTLIFSCSVEFGSISL*

>peptide 4 (29 aa)
MKRSTPSSSTSPNGRRTSRRWPARKANQR*

Sequence

>CNT30580659
GTGTGTTATATCAGAGTGCTCCAACACTCAAATTGGTGCCTAGATGTAATGTTCAGGGATACCGACTAAAATTAAGTACAGGTGAGAAAAATCCCTTGTT
GAATAGACAGTACCATCAGAAGTACATAGCCCAGGACATATTATGACTGCTGCTGATGCAGAGACGAGTGGCAAATAAGAAAGTGACAGAGAAACAGATA
ATAATCAAAACCAACTACAGTTAAGCAAACAGACGACAGACACACAGCAGAGTGATGAGGCGCATCGATGGATAATTAATTAAGCAAGCTAATTAGTGGA
TAACACGGAGCTGAGCTAGATGGAGCTCGATCAAGCCCATTGGCTGGCGTAGCTGCTGTAGTTGCTCTGCTTGTCGGTGTATCGATCCCAGATCATAATC
CCCTCGTAGTTGGCCGCCTTCTGCACCACCGGGATCACGCCGTAGTAGAGGTTCTTGGGGTGCACGTACCCGACCGTCTTCTCCGACGCCGGCAGGCCGA
AGTAGACCCCAGAGCCCGGGTACGCCGCCGTCCACTTCTCCCACTCCTGCTGCCGGGAGTCCGGGTACCGGCACCTCACCGTCGCCGACAGCTGCGCCGG
CGTCCTGGCCCTGAACCCCTTGTTGTAGTCCCAGAGCCGCGCCGCGAGCACGTCGTAGTAGTCGGCGGGGCCCTGGTCGATGAAGAGGTCGACGCCGTCG
AGCTCCACGTCGCCGAACGGGCGGCGGACGTCGCGGCGGTGGCCGGCGAGGAAGGCGAACCAGAGGTAGTCGGCGAGGTCGGTGGCGGCCTTGGCGGATG
GGAGGGAGTAGTGGCTGTTGCTGCCGGCGGGGCCGCCGATGGAGAGGAAGAGCATCTTGCTCTTGGAGTGGCAGTAGTCGATGTCGGCGCCGACGCGGCC
GATGGGGTGGCCGGAGAGGTCGAGGCGGGGCTTGCCGTGGCCGAAGACGTTGAGGCAGGGGCGGACCCACGTTAGGCCCAGTGAGCCCACACTCATTTTT
TCTTGTTCAGTGGAGTTTGGGTCTATTTCCCTGTAGCAATCGAGGCCCAACAAGTAGCAGGCCCTCACTCAGTTTTTGGCCTAGGTCCGCCCCTGCGTTG
AGGAAGGAGATGAAGATGAAGGTGTAGGTGCCGGCGTCGCAGGGGAGCCCTCCGCCTTGTTCCGGCCCCAGTACACCAGCACATTCCCGGTGTTTCCCGC
CGCCGCGGCTGGGGAGCCGGACACGAGGAAGACGAGGAGGGCCGCCAGGGCCAGCAGGGTCCGGCGGCGGCTTCCGAGCGCCGCCATTGATGGTGGTGTG
GTGTGGTGTGGATGATTGCTTCTTCTTCTCGTTGATTGTTGCAAATACCTTTGCTTGCTTATAGCTCATTATATAGTGTTG