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Detailed information on CNT30453241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53NL5|XIP2_ORYSJ, E-value = 4e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553989Saccharum spontaneumOryza glaberrima41.2562.3387.11450forward

Expression of CNT30453241

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MESDTGTPTNWQCLMSSPMPAIGWPDRSRWYLPLGPYTSRNDMMTMV*

>peptide 2 (44 aa)
MAGPARETRATAMARRAAADALLRPPSAAIAGSIDAFFLLLLAY*

>peptide 3 (29 aa)
MLVGKKLVVDRDSSDADAACMSELRNHQA*

Sequence

>CNT30453241
GTTGCATCTCTCTCATCACCTCGGTGTCTCCTCTTCTCGATCAAAGTTAAAGAGTTTGACTAACCCAAAAATTTAAAATTGTATTCTTTTTAGACAGATG
GAGTACAAATTACAAGATCTCAATTACGTTCATCACTGACACAAACTTCAAAACTTTTAAACTGTTTATTTATTTATTCATCACTTTATTCCTTCTTGCA
AAATGCAAACACACTACACACCACCACAGTGATGACTGTATTTTATTTTACAGATATAGTAGTACTACTATGCTGGTCGGGAAGAAACTAGTGGTTGACA
GGGACAGTAGTGATGCTGACGCAGCATGCATGTCTGAACTGAGAAATCATCAAGCATAGTACTTGACCATGCTTGTGTAGTTGGAGAGCTTGTCAGCGTA
GCGGTCCCAGATCATGAACCCTCCGTAGTTGTCTGCCTTCTGCACGGACGGCGCGACGTCGTAGTAGACGTTCTTGGGGTGCACCCAGCCGTGCGTCATC
TCCGACGCCGTCAACCCCACATAGAACCTGGTGGCCGGGTACGCCGCCGTCCACTTGTCCCAGGCCAGGTGCCAGTACGCCTCGCAGTCGGCGTCGTCGT
AGATCCTGACGTGGACGCGCTCGAAGATCCCCGTGTCCAGCGCCCTCTTCAGGTAGTCGAAGAGGTCCAGCGCCGCTTTTTTGGAGGGGAGAGAGTAGCC
GGAGCCGAAGCCGCCGATGGAGAGCGACACCGGGACGCCCACGAACTGGCAGTGCTTGATGTCGTCGCCGATGCCGGCGATCGGGTGGCCCGACAGGTCC
AGGTGGTACTTGCCGTTAGGGCCGTACACGTCGAGGAACGACATGATGACCATGGTGTAGAGGCCCGAGTCGCAGGCCTCCCGGAGCGTGCCCTCGGCTT
TGTTCCGGCCCCAGAACACGGTCACCTGCCCGGTCTTATTCCCCGCCGCCATGGCTGGCCCGGCGAGGGAGACGAGGGCCACTGCCATGGCTAGGAGGGC
GGCTGCTGACGCCCTCCTCCGTCCTCCGAGCGCCGCCATTGCTGGATCGATCGATGCTTTCTTCCTGCTCTTGCTTGCTTACTAGTACTGG