Detailed information on CNT30552886


BLAST search results

BLAST vs Swiss-Prot:
sp|P45732|PALY_STYHU, E-value = 1e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671225Oryza glaberrimaSetaria viridis21.5535.4694.24139forward
CNT30178786Oryza glaberrimaSecale cereale22.0220.9781.69142forward
CNT30254575Oryza glaberrimaAvena sativa27.7516.8187.71179forward
CNT30459402Oryza glaberrimaSaccharum spontaneum28.5337.2589.67184forward
CNT30105534Oryza glaberrimaOryza longistaminata27.9178.698.89180forward
CNT30100237Oryza glaberrimaOryza rufipogon67.4427.2799.08435forward
CNT30583769Oryza glaberrimaEchinochloa crusgalli27.7532.692.18179forward

Expression of CNT30552886

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MWRPPMWFMLRDFLATCITQFFTAVFMFSSRWRRSMAWHRATKNVEDMSFR

>peptide 2 (81 aa)
MISIFQFCVAIRLLVLHFFWYSISVQQSGSGAPFHSLRHSSSGSMCLRSLMATSTLFSSSPGDRVFSPVRYSVPTSSRTNR*

Sequence

>CNT30552886
TGTAAAACAAAATAATTTACTTTAGTCCCCCAACTTATACAAATTTACAGCACCAAAAGTTTCAGAAAGCTGCGTGCCAGGCCATGCGGAACTGCAGGTT
ATGGCAACCGCAGAAGCTGAAACAGCAACAGTAACATCAAGTTAACTACAAAGAACCGTAAAATAGTATCATCACCATGTTCATCTAGACATAGTAGAAA
ACATTCACACTCTCGAAATGATCTCTATCTTTCAGTTTTGTGTTGCTATACGTCTTCTTGTTTTGCATTTTTTTTGGTATTCCATTTCTGTTCAGCAGAG
TGGCAGTGGCGCGCCATTCCATTCCTTGAGGCATTCGAGCAGCGGGTCGATGTGCTTGCGCTCGTTGATGGCGACGAGCACCTTGTTCAGCTCCTCGCCG
GGCGACCGCGTCTTCTCGCCGGTGAGGTACTCGGTGCCGACCTCCTCGCGCACGAACCGGTAGAGCGGGTCCTTCTCGCAGAAGCGAGCGATGTGGAGGC
CGCCCATGTGGTTCATGCTCAGGGATTTCTTGGCCACCTGCATCACGCAGTTCTTCACCGCGGTCTTCATGTTCTCCTCGAGGTGGCGCAGGTCGATGGC
CTGGCACAGGGCGACCAAGAACGTGGAGGACATGAGCTTCAGGAT