Detailed information on CNT30671225


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552886Setaria viridisOryza glaberrima35.4621.5594.24139forward
CNT30254575Setaria viridisAvena sativa34.9512.8694.16137forward
CNT30459402Setaria viridisSaccharum spontaneum32.425.7192.91127forward
CNT30100237Setaria viridisOryza rufipogon35.468.7194.24139forward
CNT30583769Setaria viridisEchinochloa crusgalli95.9268.4984.04376forward

Expression of CNT30671225

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MLYFCFSCVWRCSLLLWAVQQSGRGSPFHSLRHSSSGSMCLRSLMATSTLFSSSPGDRVFSPVRWRRSRW*

>peptide 2 (34 aa)
MVLKCYTFVFLVYGGVLSSCGQFSRAAGARRSTP*

>peptide 3 (64 aa)
MEVFSPPVGSSAERQGLAVPLLEALEQRVDVLALVDGHQHLVQLLAGRPRLLAGEVAPKPVVTP*

>peptide 4 (34 aa)
SEAADAQAMHIVGHGVSAPGTQQHSHELLATRER*

Sequence

>CNT30671225
TTTCAGAAGCTGCAGATGCCCAGGCAATGCACATCGTAGGCCATGGCGTCTCAGCACCGGGAACACAACAACATTCACATGAACTTTTAGCTACAAGGGA
ACGGTAAAATATAGAGAGTATCATCAGCTAGACTGATCGTAAAACTTCACAATGGTCTTGAAATGCTATACTTTTGTTTTTCTTGTGTATGGAGGTGTTC
TCTCCTCCTGTGGGCAGTTCAGCAGAGCGGCAGGGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCAGCGGGTCGATGTGCTTGCGCTCGTTGATGGCC
ACCAGCACCTTGTTCAGCTCCTCGCCGGGCGACCGCGTCTTCTCGCCGGTGAGGTGGCGCCGAAGCCGGTGGTGACGCCGTAGCTGTCGGTG