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Detailed information on CNT30583769


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DZE0|PAL2_ORYSJ, E-value = 5e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671225Echinochloa crusgalliSetaria viridis68.4995.9284.04376forward
CNT30552886Echinochloa crusgalliOryza glaberrima32.627.7592.18179forward
CNT30254575Echinochloa crusgalliAvena sativa38.0719.6288.04209forward

Expression of CNT30583769

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRLPWLMATSTLFSSSPGDRVFSPVRYSVPTSSRTKR*

>peptide 2 (37 aa)
MLCVEPPILLLFFCIIPCLLSSCGQLSRAAGARRSTP*

>peptide 3 (43 aa)
HACFIVEQNNLLYPQLIHVKNSKSSEAAGAQDMHIAGHGVAAS*

>peptide 4 (49 aa)
MLKTAKVQKLQAPRTCTLQAMASQHHEHKQHSHELYSYKGTVNIDIVIS*

Sequence

>CNT30583769
GCCATGCATGCTTCATTGTAGAACAAAATAATTTACTTTACCCCCAACTTATACATGTTAAAAACAGCAAAAGTTCAGAAGCTGCAGGCGCCCAGGACAT
GCACATTGCAGGCCATGGCGTCGCAGCATCATGAACACAAACAACATTCACATGAACTTTATAGCTACAAGGGAACGGTAAATATAGATATTGTCATCAG
CTAGACTGGCTGTAAAACTTCACAATGATCTTGAAATGCTCTGTGTTGAGCCCCCTATACTTTTGCTTTTCTTCTGTATAATACCTTGTCTCCTCTCGTC
TTGCGGGCAGCTCAGCAGAGCGGCAGGGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCAGCGGGTCGATGCGCTTACCCTGGTTGATGGCGACGAGCA
CCTTGTTCAGCTCCTCACCGGGCGACCGCGTCTTCTCGCCGGTCAGGTACTCGGTGCCGACCTCCTCGCGCACGAAACGGTAGAGAGGGTACGAGCGGCA
CTCCTTGATCCTGTTCGGTATCGCCGCCGTGCCCTTCTCGACCGCCACC