Detailed information on CNT30254575


BLAST search results

BLAST vs Swiss-Prot:
sp|P35512|PALY_MALDO, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671225Avena sativaSetaria viridis12.8634.9594.16137forward
CNT30533597Avena sativaEucalyptus grandis19.0622.6687.68203forward
CNT30225885Avena sativaHordeum vulgare13.844.9590.48147forward
CNT30552886Avena sativaOryza glaberrima16.8127.7587.71179forward
CNT30364646Avena sativaSorghum bicolor27.4226.5989.38292forward
CNT30149709Avena sativaBrachypodium distachyon13.7148.6786.99146forward
CNT30583769Avena sativaEchinochloa crusgalli19.6238.0788.04209forward
CNT30592972Avena sativaEragrostis curvula12.8637.7490.51137forward

Expression of CNT30254575

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MGRRRRRTPPRGRWRWRRSMAWHRAIRNVEDMIFRMSIASAVFLEEIRPSEFTSWLCCSALCTWLVTGLPKNCSSEQYEAMAISAPFIP*

>peptide 2 (40 aa)
MISHRTSLQQHTSLRSCLPLPVHGITAAENNNDHNNNTST*

>peptide 3 (82 aa)
MAVAEVNGLAQSDQERGGHDLQDVDRLRGLPGGDQAERVHVLVVLLRALHMVGHWVAQELQLRAVRGHGDLSAFHSIVQARVA

>peptide 4 (40 aa)
MCFRSFMATRTLLSSSPGDRVFSPVRYSVPHTSRTNWYSG*

>peptide 5 (33 aa)
MASRQLKTTTTTTTTHQLNYVQRNIDRSYRQSR*

>peptide 6 (32 aa)
MYFLHDLPSYKFTTTHEFEKLSAFASSWHHGS*

Sequence

>CNT30254575
GCGAGAACTCTTTTTTGATGACAAAGAAGACAAGTTAATGCGTTAACATGGCGTGTATTATATGAAACAAAATAATGTACTTTCTTCATGATCTCCCATC
GTACAAGTTTACAACAACACACGAGTTTGAGAAGCTGTCTGCCTTTGCCAGTTCATGGCATCACGGCAGCTGAAAACAACAACGACCACAACAACAACAC
ATCAACTTAACTACGTACAAAGAAACATAGACAGATCGTATCGCCAATCTAGATAACAACAGGAACCCTCCCGCTTCACAGTCTTGGAATGTGTTCTAGT
ATATTCAGTGTGTGTACGTCTTCTTTTCTTTTCCTTTCCTTTCCTTTCCTTTGGTAGTACTATTACCTTTTGCTCAGCAGAGCGGCAGGGGCTCGCCGTT
CCACTCCTTGAGGCACTCCAGCAGCGGGTCGATGTGCTTCCGCTCGTTCATGGCCACCAGGACCTTGTTGAGCTCCTCCCCTGGCGACCGGGTCTTCTCG
CCGGTGAGGTACTCCGTGCCGCACACCTCGCGCACGAACTGGTACAGCGGGTAGGAGCGGCAGTCCTTGATCCGGTTCGGCGCCACGGGCGTCCCGTTCT
CCACGGACGCGCGCGCGGCCTCCACCTCCTTGGGCAGCGCGGCGCGCACGTTCTGCTCGAACTCCGCGACCTTGGCGAAGATGGACGTCTCCAGGGCGCG
CTCGCCTTCGCCGTTGGCCAGCGCGTGCTCGATCAGCACGGCCCTGAGCTTCTGCATCAGCGGGTAGTTGGCGCTGCATGGGTCGTCGGCGTAGGCGAAC
ACCGCCTCGCGGTCGATGGCGGTGGCGGAGGTCAATGGCCTGGCACAGAGCGATCAGGAACGTGGAGGACATGATCTTCAGGATGTCGATCGCCTCCGCG
GTCTTCCTGGAGGAGATCAGGCCGAGCGAGTTCACGTCCTGGTTGTGCTGCTCCGCGCTCTGCACATGGTTGGTCACTGGGTTGCCCAAGAACTGCAGCT
CAGAGCAGTACGAGGCCATGGCGATCTCAGCGCCTTTCATTCCATAGTCCAGGCTCGGGTTGCGC