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Detailed information on CNT30100237


BLAST search results

BLAST vs Swiss-Prot:
sp|P35512|PALY_MALDO, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671225Oryza rufipogonSetaria viridis8.7135.4694.24139forward
CNT30177347Oryza rufipogonSecale cereale20.0660.6179.69320forward
CNT30225206Oryza rufipogonHordeum vulgare6.2146.2687.8899forward
CNT30552886Oryza rufipogonOryza glaberrima27.2767.4499.08435forward
CNT30254573Oryza rufipogonAvena sativa7.8449.4193.6125forward
CNT30364646Oryza rufipogonSorghum bicolor16.4923.9590.11263forward
CNT30595670Oryza rufipogonOryza meridionalis6.8350.9391.74109reverse complement
CNT30105534Oryza rufipogonOryza longistaminata11.680.7998.38185forward
CNT30576230Oryza rufipogonOryza barthii4.8929.3288.4678forward
CNT30592972Oryza rufipogonEragrostis curvula10.0344.0895.62160forward

Expression of CNT30100237

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEKVESLNPKFGSKHSPKYIQFQQSWEFGP*

>peptide 2 (98 aa)
MLSIFQFCVAIRLLVLHFFWYSNSVQQSGSGAPFHSLRHSSSGSMCLRSLMATSTLFSSSPGDRVFSPVRYSVSRTRSASPLASACSMSTARSFCING*

>peptide 3 (68 aa)
MWRPPMWFMLRDFLATCITQFFTAVFMFSSRWRRSMAWHRAIKNVEDMSFRMSMAWHRATKNVEDMSFR

Sequence

>CNT30100237
GACGGAGGAAGTAGTATTTCTCGTTATGATCTCCACTGCCGGTGGACAGTAGAGCAAAACTGATCAACAAAGAAAAAAAACATCTAGGTTGTGTTTAGTT
CACACTAAAACTAAAATTAAAAGTTTGGTTGAAATTGGAACGATGTGATGGAAAAGTTGGAAGTTTGTGTATGTAGAAAAGTTTTGATGTGATGGAAAAT
TTGGAAGTTTGAAGAATTATTTTATAACTAAACAGGGCGCTACTCTTGTATGCATCACAAACTGAGTAGCTAGTACAAGGCTGTGTTCAGTTTCTTTTAA
AGTTGAAAGTTTAGGTTGAAATTGGTACGATGTGACTGAAAAGTTATGTGTGTATGACAGGTTAATGTGATGGAAAAAGTTGAAAGTTTGAATCCAAAGT
TTGGATCTAAACATAGCCCAAAGTACATCCAATTTCAACAGAGTTGGGAGTTTGGACCATGAATCCAGGCGTAGTACCACTGCTTATTGAGAAACACACG
CTTCCATGATACCGACCACATTTTCTCGTGGTAGGTACGAATAACAAATTGTAACAGCCATCCTCGCGAGCTGACCACCATGATTATATAGCGATTGGCC
ACCTGCAAAAGTTAGTCTGACTTGAACATGGCCGCGTGTCTCCTGCATTTTCGTGATCTTGTACAGTTGTAAGTACCATCAGAAATAGATACTGCTACAA
ATCAGCATTTTCGAGAATAGTGTGTGTGGGCGCGCGCTTGACAAGACGAAATGGATGTGAAGAACTTCTTCAGAGAACGAGCAGCAGCTGTAAAACAAAA
TAATTTACTTTAGTCCCCCAACTTATACAAATTTACAGCACAAAAAGTTTCAGAAAGCTGCGTGCCAGGCCATGCGGAACTGCAGGTTATGGCAACCGCA
GAAGCTGAAACAGCAACAGTAACATCAAGTTAACTACAAAGAACCGTAAAATAGTATCATCACCATGTTCATCTAGATATAGTAGAAAACATTCACACTC
TCGAAATGCTCTCTATCTTTCAGTTTTGTGTTGCTATACGTCTTCTTGTTTTGCATTTTTTTTGGTATTCCAATTCTGTTCAGCAGAGTGGCAGTGGCGC
GCCATTCCATTCCTTGAGGCATTCGAGCAGCGGGTCGATGTGCTTGCGCTCGTTGATGGCGACGAGCACCTTGTTCAGCTCCTCGCCGGGCGACCGCGTC
TTCTCGCCGGTGAGGTACTCGGTCTCCAGGACGCGCTCGGCGTCGCCGTTGGCGAGCGCGTGCTCGATGAGCACCGCGCGGAGCTTCTGCATCAACGGGT
AGTTGGCGCTGCAGGGGTCGTCGGCGTAGGCGAACACGGCCTCGCGGTCGATCGCGGTGAGCAGGTCCTTCTCGCAGAAGCGAGCGATGTGGAGGCCGCC
CATGTGGTTCATGCTCAGGGATTTCTTGGCCACCTGCATCACGCAGTTCTTCACCGCGGTCTTCATGTTCTCCTCGAGGTGGCGCAGGTCGATGGCCTGG
CACAGGGCGATCAAGAACGTGGAGGACATGAGCTTCAGGATGTCGATGGCCTGGCACAGGGCGACCAAGAACGTGGAGGACATGAGCTTCAGGAT