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Detailed information on CNT30237472


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 1e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539776Brassica oleraceaBrassica napus53.885.3499.29425forward
CNT30145117Brassica oleraceaMedicago truncatula24.8121.388.27196forward
CNT30609983Brassica oleraceaGossypium raimondii44.9444.182.82355forward
CNT30354802Brassica oleraceaLactuca sativa45.9542.1685.12363forward
CNT30337333Brassica oleraceaCynara cardunculus46.8452.6384.86370forward

Expression of CNT30237472

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MVSKVLQGSLTSDNGLNKESKHREHSQSSVLDLLHLQLRESLWVEQVLGLSQGPVSCNSVTFNGSHQDHLSSPNSQNALSMNQAWVSQVVKSSVAEDL*

>peptide 2 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30237472
AAGATATTGAGTTGGGGGGAAAAGAGTTATTTGATTAATAGTAAAGCTGTAAATCATACAAAAACTTGCAGGTTTTACATCTAAACAACATCTCCCTCTC
TCTTATTACACTCATACTGAAGCAAATACTGATAAGAACTTGGCTCACTTTCCGGGAACGAAGTTGGTTGCGAAGGCCCATGCGTTGTTGTTGACTGGAT
CAGCTAGATGGTCAGCAAGGTTCTCCAAGGGTCCCTTACCAGTGACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTT
GACCTCCTTCACCTTCAACTCCGCGAAAGCCTCTGGGTCGAGCAAGTCCTCGGCCTCTCCCAAGGGCCCGTTTCCTGCAACTCTGTAACCTTCAACGGCT
CCCATCAAGATCACTTGAGTAGCCCAAATAGCCAAAATGCTCTGAGCATGAACCAAGCTTGGGTTTCCCAAGTAGTCAAGTCCTCCGTCGCTGAAGATCT
GTGAGCCAGCCTTGAACCAAACCGCCTCTCCGAACTTGACTCCATTCCTGGCCAGCAACTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCT
GCAGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGATCGGCTGAGAGACCGGCGGTGTCCCACCCGTAGTCTCCTGGGAACTCTCCGGTA
AGGTAGCTCGGTGGCTCGCCGGAGAATGGACCCAAGTACTTGACTCTCTCCGCTCCGGTCCATCAGGCAGCCCATGGTACGGATCAGAGA