CANTATAdb - search

Detailed information on CNT30354802

BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 7e-158

BLAST vs NONCODE:
NONSTUT001352, E-value = 3e-49

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30514020	Lactuca sativa	Juglans regia	60.51	58.87	84.07	521	forward
CNT30380511	Lactuca sativa	Manihot esculenta	41.11	50.28	85.59	354	forward
CNT30539776	Lactuca sativa	Brassica napus	42.16	72.89	85.12	363	forward
CNT30237472	Lactuca sativa	Brassica oleracea	42.16	45.95	85.12	363	forward
CNT30725369	Lactuca sativa	Lupinus angustifolius	46.11	39.7	85.39	397	forward

Expression of CNT30354802

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MELLSLPVRRKEKIEPWWRQPLMRVCLKL

>peptide 2 (29 aa)
MAHLQWITSSSRFLAKVSGSAESPAVSQP*

>peptide 3 (35 aa)
MNQTRVSQVVKSTLTEDLGSSLEPHSLTELDTISG*

>peptide 4 (42 aa)
MENMASRPFLISFTFNSAKASGSSASPKGGSTTSPRGPPPIL*

Sequence

>CNT30354802
ACAACCATATAAAATATCATATTAATTTACAAAGAAATTGTCATACACTTCATCTACAAAACACTTTTAAAGAAAACTAATAAGCTCACTTTCCGGGGAC
AAACATTGTTAGCCACAGGGTCAGCAAGGTGGTCAGCCAAGTTCTCCAATGGTCCCTTTCCGGTTACAATGGCTTGAACAAAGAACCCAAACATGGAAAA
CATGGCAAGCCGACCATTCTTGATTTCCTTCACCTTCAACTCCGCAAAAGCCTCGGGGTCATCAGCAAGCCCCAAGGGTGGGTCAACAACCTCACCGAGG
GGTCCTCCACCAATTCTGTAACCCTCAACAGCACCCATCAAGATCACTTGGGTAGCCCAAATGGCCAAGATACTCTGCGCATGAACCAAACTAGGGTTTC
CCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTTCTGGCTAAAAGCTCGGGGAA
GACGCATCCTAGAGCTCCAAGCATGGCCCACCTACAGTGGATAACTTCAAGTTCGCGGTTCTTGGCAAAGGTTTCGGGGTCGGCAGAAAGTCCGGCGGTG
TCCCAGCCATAGTCACCGGGGAATTCGCCTGTAAGGTAGGTTGGGGACTCACCGGAGAATGGACCCAAGTACTTGACACGGTCTGGGCCATACCATGGGC
TTCCAGATGCAACCTGCTTGACTGTAGCCTTCCTCATAGAAACACGTCCATTCCCAGAAAGCTCAGAACCAGATGGAGCTACTTTCACTGCCTGTCCGGA
GAAAGGAGAAGATAGAGCCATGGTGGAGGCAGCCATTGATGAGAGTGTGTTTGAAATTAGG