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Detailed information on CNT30678277


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522288Setaria viridisSetaria italica79.9339.596.83442forward
CNT30684067Setaria viridisTriticum urartu16.0926.7388.7689forward
CNT30721471Setaria viridisTriticum spelta16.8222.6889.2593forward

Expression of CNT30678277

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MERSYYTPITRVPITGPAGRYHSAAKLIESEELTK*

>peptide 2 (42 aa)
TIDISHYRYTQANIYRWREATTHQSQGFPSQGPPVATTQRPS*

>peptide 3 (61 aa)
RLTYPITDTRKQIFTDGEKLLHTNHKGSHHRARRSLPLSGQVDRVRGTDQVVVLSILLPSP*

Sequence

>CNT30678277
ACGATTGACATATCCCATTACAGATACACGCAAGCAAATATTTACAGATGGAGAGAAGCTACTACACACCAATCACAAGGGTTCCCATCACAGGGCCCGC
CGGTCGCTACCACTCAGCGGCCAAGTTGATCGAGTCAGAGGAACTGACCAAGTAGTAGTACTAAGCATTTTACTCCCTAGTCCATAACATAGGACAAAAT
TAAATAAAAGGCAAAGTCTCCAACCTCGGACAGCAACGCAGCCGTGGTACATGCGTTTTAGATAACCACAAGGACCAGCAAACATGTGGCCTGACAGGGA
CCGGCCACCGCTCCTCCGTCGATCTCATCTCACCCGATCCGAGATCTAACGGTGGTTGCTCCCGGGGTGGAACACGCTGCGCCACACGTTGTTGCCGCCG
CGCGGCGTCGTCGACGACGACGGCGTCCCCGGCGTCGTCGGGCTTCTCCAGCATCTTCGCCTTCCTCCAACAAAGGTTACTGCTGGCCACTGGCTTACTG
CACTACTATGCTAACGAGAGGAAGAGCACCGCACCACCAGAGTGTCCGGGTAC