Detailed information on CNT30571929


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 3e-35

BLAST vs NONCODE:
NONTCAT002529, E-value = 2e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513754Vitis viniferaJuglans regia71.9373.781.04269forward

Expression of CNT30571929

Peptides detected in this lncRNA

>peptide 1 (39 aa)
CSKRRSRIHSSRRSGKNHRTHICNSKSHRSGNRKSHRTH*

>peptide 2 (48 aa)
AANGVLVFTAAVDQAKIIELIYATASLIARAIGKVTALTRGRARRGRW*

>peptide 3 (56 aa)
MVNQCSSLCRSTPPFPSLFPMNSYKSSSLHYLQSHSQLSELHGQCHLDHPSNPQHIF

Sequence

>CNT30571929
GTGCAGCAAACGGCGTTCTCGTATTCACAGCAGCCGTAGATCAGGCAAAAATCATAGAACTCATATATGCAACAGCAAGTCTCATCGCTCGGGCAATAGG
AAAAGTCACCGCACTCACTAGGGGAAGGGCCAGGAGAGGGAGATGGTGAAGAAGACTCTTTGGTCGGATAGGAAGCCATGGCATTGATGGCGCATTCTCC
ATATGGTAAATCAGTGTTCCTCTTTATGTAGAAGTACCCCTCCATTCCCCAGCTTGTTCCCCATGAATTCTTACAAATCCAGTAGTCTTCACTATCTTCA
GAGCCATAGCCAACTATCAGAACTGCATGGTCAATGTCATCTGGATCATCCGAGCAATCCCCAGCATATATTCC