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Detailed information on CNT30163297


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 4e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513754Pistacia veraJuglans regia35.467.483.33246forward
CNT30705582Pistacia veraPrunus avium49.7879.5480.92346forward

Expression of CNT30163297

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEIPINKLKKQLFPLLSFQFRQLHTFNFH*

>peptide 2 (52 aa)
MNNSHRSGSNQRIHIGNNMSHHLGNMRSPHIHLVKARELVQMILWSDKRPLH*

Sequence

>CNT30163297
TTACAGTCTGAAAAACAATGCTGAGATGGCTTGCATTTGAACAATCTTACAAGCCAGGACATCTAAATGAAACATAGTTATACCAAATGGAAATTCCAAT
AAACAAGCTAAAGAAACAACTCTTTCCCCTTTTATCTTTCCAGTTTCGCCAGCTGCATACGTTTAATTTCCATTAAAACATATGTCCAATGCAGACTCAG
AGAATGAATGTCCCTGTGAGGAAAAAAAAATGAAATAGCAAGAGTGACACAACCATCAAACTTCAAAGAGACTAAAAATGTTGTTCACTCATTTAGCGCA
TTGCAGCGAACTGGTTCCTCTTCCACTGGAGAGGTAGAATTTTCATACCTTGAGGCAGAGCCCTTCTTCCACATCGCAAATAGGATAATCACTGGGGCAG
CAGTACTCAGTTCCAGTACAGCACACAGCATTTTCATATGAACAACAGCCATAGATCAGGCAGTAATCAAAGAATTCATATAGGCAACAACATGTCTCAT
CACTTGGGCAATATGAGAAGTCCCCACATTCACTTGGTGAAGGCGAGGGAGCTGGTGCAGATGATTCTTTGGTCGGATAAGAGGCCATTGCATTGACCGC
ACATTCACCATATTCTAAGTCTGTGTTCCTTTTAAGGTAGAAATATCCGTCCATTCCCCAACTTGTTCCCCAAGAATTCTTTACAATCCAATAAT