Detailed information on CNT3050803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728471Cucumis sativusCorchorus capsularis27.766.4883.6798forward
CNT30380865Cucumis sativusManihot esculenta28.3314.2787100forward
CNT30488443Cucumis sativusOlea europaea29.7513.4884.76105forward
CNT30160456Cucumis sativusPistacia vera27.768.3887.7698forward
CNT30238141Cucumis sativusBrassica oleracea28.0518.6184.8599forward
CNT30261390Cucumis sativusBrassica rapa21.2511.9285.3375forward
CNT30209793Cucumis sativusHelianthus annuus23.5114.7486.7583forward
CNT30574029Cucumis sativusVitis vinifera27.4812.9783.5197forward
CNT30330081Cucumis sativusDioscorea rotundata28.0524.3884.8599forward

Expression of CNT3050803

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MNRSGGSRGLTLKLHSDLDQIKRVGGTTGNNGSNSTFDKSLDTHGNFLGKERREERELE

>peptide 2 (28 aa)
MEAIPPSTNPLTPMGIFSGKKEERKENWK

Sequence

>CNT3050803
TGATCGGTCCATTTCTGTTTTAGAATATCGTAAAGCCCCATACGAGTAGTCGAGTACAGAGTCTGTCGTAGAACGGTGGCGGAAACGCCAGAGAAAAGAG
CGGCGGGGGAGGAATATTTATAGACTTCGGAGCAGTTACAGAGGTGGTTTGAAAAGCGAGAGCAGGGCGGAGGTTATGAACCGCAGCGGTGGGAGCAGGG
GTCTCACCCTGAAGTTGCATTCGGACCTTGATCAGATCAAGCGGGTGGGTGGAACAACCGGCAACAATGGAAGCAATTCCACCTTCGACAAATCCCTTGA
CACCCATGGGAATTTTCTCGGGAAAGAAAGAAGAGAGGAAAGAGAATTGGAAA