Detailed information on CNT30574029


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 5e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728471Vitis viniferaCorchorus capsularis29.1414.4279.82218forward
CNT30330081Vitis viniferaDioscorea rotundata12.5723.1586.1794forward
CNT3050803Vitis viniferaCucumis sativus12.9727.4883.5197forward

Expression of CNT30574029

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGISLRLEKKGNRKRQSKTSRNRGSAHWRPGDENGA*

>peptide 2 (50 aa)
MATSAGLPTAAPMPPATSPAAILRTRGMLPESGSDHFCLRTSYRPMRVVE*

>peptide 3 (36 aa)
ALVVSTLGYRQATVSLHTDHGDVGRVADGGADAACD*

>peptide 4 (63 aa)
MAWLGTWDSPCSCIRTLMRSSGWVEHPATMEAMPPSTKPLSPISESFVSYRKNEVGYKDKKWV*

>peptide 5 (57 aa)
PGSFDAGLPAGDRQLAYGPWRRRPGCRRRRRCRLRLAPLLSCARGACCLNLDRTIFA*

Sequence

>CNT30574029
GCCCTGGTAGTTTCGACGCTGGGTTACCGGCAGGCGACCGTCAGCTTGCATACGGACCATGGCGACGTCGGCCGGGTTGCCGACGGCGGCGCCGATGCCG
CCTGCGACTAGCCCCGCTGCTATCTTGCGCACGAGGGGCATGTTGCCTGAATCTGGATCGGACCATTTTTGCTTGAGAACGTCGTATAGACCCATGCGAG
TGGTGGAGTAGAGCGTCTGTCGCAGCACGGTGGCCGACACGCCGGAGAAGAGGGCGGAGACTCCTTCGGCCTGGACGATCTTAACCCCCACGGACACGGG
ACCCACCCGAGGAGCGGAGTTGAAAGCGAAAGCGGGCCTCAGATTGTGAATGGCTTGGTTGGGAACATGGGATTCACCCTGTAGCTGCATACGGACCTTA
ATGAGATCGAGTGGGTGGGTGGAGCATCCAGCCACAATGGAAGCAATGCCGCCTTCAACGAAACCCTTGAGTCCCATATCAGAATCTTTTGTTTCTTATC
GAAAAAACGAAGTGGGTTATAAAGATAAAAAATGGGTATAAGCCTTCGGCTTGAGAAAAAGGGAAACAGGAAACGACAGTCTAAGACCAGTAGGAATCGG
GGTTCAGCTCACTGGAGACCAGGAGATGAGAATGGAGCGTAAAAACGAGTGAAGAAGAGTGAGGCACGCAGGGTCTCTGAGACATACGAGAACGTGAATA
TTTTTCGCGAGTTTGGAGAGAGGAACTGAGGAGAGGTAGAATTTATAG