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Detailed information on CNT30380865


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 3e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3097992Manihot esculentaSolanum tuberosum17.1226.7383.33120forward
CNT30128643Manihot esculentaCorymbia citriodora13.5529.0583.1695forward
CNT3050803Manihot esculentaCucumis sativus14.2728.3387100forward

Expression of CNT30380865

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PQSLQLSPSSLRNQSLRCTARLFLPPLSCS*

>peptide 2 (71 aa)
GHNPFSFHRLHCAINRSVVRRGFSCLHFHVHNPRLYHQRHASSIWIGPFLFENIVKTHASCGVECLTENGG*

>peptide 3 (54 aa)
ATIPSAFTVFIAQSIAPLYGAAFPASTFMFITLVFITSGMLPVSGLVHFCLRTS*

>peptide 4 (34 aa)
MQQHLQPAQCACRQRLGQREAAVVGQRHGWSWEE*

>peptide 5 (67 aa)
MRMPTETGPTRGGGGGAETWMELGGMTAAEAEELKLHADLNQIERMSGATSNNGSNPTFNKTFDTHG*

Sequence

>CNT30380865
GGCCACAATCCCTTCAGCTTTCACCGTCTTCATTGCGCAATCAATCGCTCCGTTGTACGGCGCGGCTTTTCCTGCCTCCACTTTCATGTTCATAACCCTC
GTCTTTATCACCAGCGGCATGCTTCCAGTATCTGGATTGGTCCATTTCTGTTTGAGAACATCGTAAAGACCCATGCGAGTTGTGGAGTAGAGTGTCTGAC
GGAGAACGGTGGCTGAAACGCCGGAGAACAATGCAGCAACACCTTCAGCCTGCACAATGCGCATGCCGACAGAGACTGGGCCAACGCGAGGCGGCGGTGG
TGGGGCAGAGACATGGATGGAGTTGGGAGGAATGACGGCAGCAGAAGCAGAGGAATTGAAGCTGCATGCGGACCTTAATCAGATCGAGAGGATGAGTGGA
GCAACCAGCAACAATGGAAGCAATCCCACCTTCAACAAAACCTTTGACACCCATGGTTAGTTATCTCTCCTTCTCTACCTTCTTTCCCTCTGGTTAAAAA
AAGAATGAAAAAATATGGAACCAAAAACGCAAAAATCAATAAAATTTGCCTATAAAAATGAAACCCAGTTGGGGTTCAAATCACTGGAGACAAGAAGATG
AGAATGGAGGCTAAAAGCTACGGAAGAAGAGTGAGGGACGGAAGGCCTCTGAGACATATGCTAATGAAAATAGAATAAGAAGAAAAGAATGGGTTTAGGA
T