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Detailed information on CNT30728471


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 7e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546427Corchorus capsularisIpomoea triloba7.8727.5581.51119forward
CNT30616300Corchorus capsularisSesamum indicum46.348.4177.57700forward
CNT30379202Corchorus capsularisManihot esculenta25.9330.8278.06392forward
CNT30160456Corchorus capsularisPistacia vera36.0446.5879.08545forward
CNT3097992Corchorus capsularisSolanum tuberosum6.9423.3985.71105forward
CNT30568460Corchorus capsularisActinidia chinensis16.5329.3482.4250forward
CNT30238141Corchorus capsularisBrassica oleracea7.2820.6887.27110forward
CNT30313432Corchorus capsularisCamelina sativa7.8753.8581.51119forward
CNT30607892Corchorus capsularisGossypium raimondii22.1631.9787.16335forward
CNT30574029Corchorus capsularisVitis vinifera14.4229.1479.82218forward
CNT3057955Corchorus capsularisAmborella trichopoda4.526.1592.6568forward
CNT30726058Corchorus capsularisLupinus angustifolius18.5828.1880.07281forward
CNT3050803Corchorus capsularisCucumis sativus6.4827.7683.6798forward

Expression of CNT30728471

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRTIATSAGFPTAAPIPPAINPAAILRPRGMVLVSWSVHFCLRMS*

>peptide 2 (46 aa)
MFITLVLITSTGFDATAATNPAEKLAATCVPSPSFINPFPKIISLI*

>peptide 3 (60 aa)
MKLNKKMKLLRPVGIGVHLTGNQEMGMKTESYRRRVRNAKPLRHMLGKKPFFLFFCFCDK*

Sequence

>CNT30728471
TAATAAGAGAAATATTTTATGATAATATCACTTTCACTAAAATTAAATAAAAATCCCAGTCATAAACATTCTCTCATAACATAAGAATTCAGAAGCAAAG
ACAAAACTCTGCCTCCAAATTTCATGGAAAACTGAAACTCAGAATATCATTTTTCTAGTTTTTTTTTAACCACATAAAATAAAACTGAAACTTATTACGT
AACTTGAAGCATAGAATTCCTAAGATTATTTTTCATCATCATCATCATCATCTAAAAATCCTTGAGCAGCTTCCGAACCTGTTCCAACGTAACGAAAAGG
ACCACCGTGAAAGGTCCCTGTCTCGAAATCGTCGGAATAAATCCCTTATACAAAGCCATAGGCCCTTCTGCCTTCACCGTTTTCAGAGCACAGTCCAACG
CGCCGGCATACGGTGGCTTTTGCCCTGGCTCCACCTTCATGTTCATAACCCTAGTTTTAATCACATCAACAGGATTCGACGCCACCGCCGCCACAAACCC
CGCCGAGAAACTCGCTGCCACGTGTGTCCCGAGCCCGTCTTTCATCAACCCATTTCCCAAAATCATTTCTTTGATCTGATCGTAGGAAGCCAGCTGCGAC
GCCGTTACCAACATCGCACGGTTCACCGTGAGCGATGAGCCACGCCACAGGGATGTGACTCCTTCCTGTTTGCTCATGCGAGTGATAGCGTCGACAACGC
TGGTGTAGTTGCGGCGTTGAGCTACAGGGAGGCGGCCGTCAGCTTGCATGCGGACCATTGCCACGTCGGCTGGGTTTCCGACGGCGGCGCCGATCCCTCC
GGCGATTAACCCAGCGGCGATTTTGCGTCCGAGAGGCATGGTTTTGGTCTCCTGGTCGGTCCATTTTTGTTTGAGGATGTCGTAGAGACCCATACGGGTG
GTTGAATAAAGGGTCTGGCGGAGAACGGTGGCGGAGACGCCGGAGAAAAGAGCTTTTACACCTTCGGTTTGGAAGATCCGGATTCCGGTAGCTAAAGGTC
CAACACGCACCGCCGCGGGAGGCGGAGGAGGAGGCGGTGGTGGTGTGGTGGTGAAAGGCCAAAGCAGGGCGGAGGTTTTGGACAGCTGGGTTGGGAACAA
CATTGGTTTCACCCTGGAGCTGCATTCGGACTTTGATTAAGTCAAGTGGGTGGGTTGAACATCCAGCCACAATCGATGCAATACCTCCTTCAACAAATCC
TTTAACTCCCATTTTTCAATTAATCTCTTTCAAAAAAATCAAAACTTTTTGATGTTTAACAATGAACTATGTCAAATACAAAAAAGAATGAACAAAACTG
ATTGATTTTGTCAGCAAAAAAAGAATATGAAATTAAACAAGAAAATGAAACTATTGAGACCAGTTGGAATTGGGGTTCATCTCACTGGAAACCAGGAGAT
GGGAATGAAGACCGAAAGCTATCGAAGAAGAGTGAGGAACGCTAAGCCTTTGAGACATATGCTGGGAAAGAAACCCTTTTTTCTGTTTTTCTGTTTTTGT
GACAAATGAAAA