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Detailed information on CNT30238141


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616300Brassica oleraceaSesamum indicum20.687.6183.64110forward
CNT30728471Brassica oleraceaCorchorus capsularis20.687.2887.27110forward
CNT30160456Brassica oleraceaPistacia vera20.39.2387.04108forward
CNT30261390Brassica oleraceaBrassica rapa31.7726.8791.72169forward
CNT30330081Brassica oleraceaDioscorea rotundata16.1721.1884.8886forward
CNT3050803Brassica oleraceaCucumis sativus18.6128.0584.8599forward

Expression of CNT30238141

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRSLLQRNPLDPFQKDSFFFGENEKGYTFIVFKETSWN*

>peptide 2 (42 aa)
WFPGRSIWFSGCRIDPYESSSRESGGERWRRRRRRERACLLV*

Sequence

>CNT30238141
TTGGTTTCCGGGTCGGTCCATTTGGTTTTCAGGATGTCGTATAGACCCATACGAGTCGTCGAGTAGAGAGTCTGGCGGAGAACGGTGGCGGAGACGCCGG
AGAAGAGAGCGCGCGTGCCTTCTTGTCTGATGATGCGAGATCCGATGGTGATGATACCCACGCGCGGAGGAGCTGCATTCGGACCTTGATTAGATCGAGC
GGGTGGGTCGAACAGCCCGCTACGATCGATGCGATCCCTCCTTCAGCGAAACCCTTTAGACCCATTTCAGAAAGATTCCTTTTTTTTCGGAGAAAATGAA
AAAGGTTATACTTTTATTGTTTTTAAAGAGACCAGTTGGAATTAGAGCTGATCTCACTGGAGATTAGGAGATGGGAATGGAGACCAAAAGCTATAGAAGA
AGAATGAGGAACTTGAGGTCTTTGAGACATATGCCGTTCAGACAGGTTTTTTTTTAGGTTGGGAGTTTATGTCTTTCAGAGAGATGAGGTTGAAGAGGAA
GAGAGAAGACAAGCGTTTAAATAAGGGAGGGG