Detailed information on CNT30160456


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 3e-93

BLAST vs NONCODE:
NONTPRT000749, E-value = 1e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546427Pistacia veraIpomoea triloba10.9429.6383.59128forward
CNT30616300Pistacia veraSesamum indicum46.5837.6981.65545forward
CNT30728471Pistacia veraCorchorus capsularis46.5836.0479.08545forward
CNT30379202Pistacia veraManihot esculenta20.9419.2680.82245forward
CNT30588133Pistacia veraMusa acuminata15.8122.9881.62185forward
CNT30238141Pistacia veraBrassica oleracea9.2320.387.04108forward
CNT30173347Pistacia veraTrifolium pratense22.3136.7678.54261forward
CNT30654380Pistacia veraRosa chinensis21.220.6783.47248forward
CNT30128643Pistacia veraCorymbia citriodora8.6330.8982.18101forward
CNT30706621Pistacia veraPrunus avium9.7425.1182.46114forward
CNT3057955Pistacia veraAmborella trichopoda5.4724.6285.9464forward
CNT30330081Pistacia veraDioscorea rotundata8.4624.3882.8399forward
CNT30724289Pistacia veraLupinus angustifolius4.5326.3790.5753reverse complement
CNT3050803Pistacia veraCucumis sativus8.3827.7687.7698forward

Expression of CNT30160456

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MARFTVRDEPRHRLVTPSCFAILVMASTTLL*

>peptide 2 (95 aa)
RNRRNKPFIKSHWPLRLHRLHRTIDRPLVWRRLPWLHLHVHHPCLYHVHGVRRNRRHEPRCETRCHVRTQSVTHHALRQDRFFDLIVRRQLRRRH*

>peptide 3 (38 aa)
MSRTSGNNGSDAAFNKSLNTHFLVTELKPKKGKSWVIN*

>peptide 4 (46 aa)
MFITLVFITSTGFDVTAATNPAAKLAVTCVPSPSRITPFAKIVSLI*

Sequence

>CNT30160456
CTCGAAATCGTCGGAATAAACCCTTTATAAAGAGCCATTGGCCCCTCCGCCTTCACCGTCTTCACCGCACAATCGATCGCCCCCTTGTATGGCGGCGCCT
TCCCTGGCTCCACCTTCATGTTCATCACCCTTGTCTTTATCACGTCCACGGGGTTCGACGTAACCGCCGCCACGAACCCCGCTGCGAAACTCGCTGTCAC
GTGCGTACCCAGTCCGTCACGCATCACGCCCTTCGCCAAGATCGTTTCTTTGATCTGATCGTACGACGCCAACTGCGACGCCGTCACTAACATGGCGCGG
TTCACCGTAAGGGATGAGCCGCGCCACAGGCTAGTCACGCCCTCTTGTTTCGCCATTCTCGTGATGGCGTCTACCACGCTCTTGTAGTTCCGACGCTGAG
CCGGAGGGAGTCTTCCGTCGGCTTGCATACGAACCATTGCCACGTCAGCAGGGTTCCCAACCGCTGCTCCGATCCCTCCGGCAATCAGACCAGCAACGAT
TTTACTCGTGAGAGGCATGGTTCGGGTTTCCGGGTCGGTCCATTTGTTTTTTAGAATATCGTAAAGGCATGGTTCGGGTTTCCGGGTCGGTCCATTTGTT
TTTTAGAATATCGTAAAGGCCCATTCGGGTGGTGGAGTATAGAGTCTGACGAAGAACGGTGGCGGAGACGCCGGAGAAAAGAGCTGCAACTCCTTCTTGC
TTAACGAGACGGACGCCGACTGTGACGAGACCCACACGTGGTGGTGGTGGTTGGACGTGGACGGCGGTGGTGGTGGTGGGGAAGGCGAGAGCCGGACGGA
GAGATTGAACCGGCTGTGTGGGCGCGTGGGCTTCACCCTGAAGCTGCATGCGGACTTTGAGGAGATCAAGTGGATGAGTCGAACATCCGGCAACAATGGA
AGCGATGCCGCCTTCAACAAATCCCTTAACACCCATTTTCTTGTCACGGAATTAAAACCAAAGAAAGGAAAGAGTTGGGTGATTAATTAGAGTGAATAAA
ACGACTTGTTTTAACGAGATGAATTACCAGTTGGAATTAGAGTTCATCTCACTGGAGACCAGGAGATGGGAGTGGAGGCCAAAAGCGCTAGAAGAAGAAT
GAGGAACGACGGGCCTATGAGACATATGCTGCTTAAATGAACAAAGAAAAGAAAAAAGGAAAAGTGGAAG