Detailed information on CNT30584982


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30365808Echinochloa crusgalliSorghum bicolor14.4128.7690.87241forward
CNT30498134Echinochloa crusgalliDigitaria exilis14.0659.6492.77235forward

Expression of CNT30584982

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PVDIAAVVSALVRVVLLCVDSTIVDDELKRVVHQTSIAPLVV*

>peptide 2 (33 aa)
MDQLTAASLVLDLCDGALGPPVDGFRQLLVVGG*

>peptide 3 (46 aa)
MNLLPSICPPSCKTIKINTIHLSLLPPVLIHVISSYTNRQIEMNFN*

>peptide 4 (50 aa)
MPSTAAIVEKAQQLPERDRQRSDFNTSMSSIPPLYFTNQFKMYASNDTKV*

>peptide 5 (54 aa)
MQNHKDQYNTSVTPASRIDTCDFQLYQQTNRNEFQLEKGLQVQRIIPQLGLELI*

>peptide 6 (61 aa)
MSAAAARVTSSSSAAAAASDAVEEVPISAAPRRLAEEEEEQVDEREQSQRGRRWRPPSFSIH

>peptide 7 (72 aa)
MCRYFFEETCADTNPNYCNLTNTSRLHNFPIIKDQTNKPVESSLVLELRRTIAFSSRRGIKNGSAYRSFPGP*

Sequence

>CNT30584982
CCTGTTGACATCGCAGCGGTTGTCAGTGCCCTTGTAAGGGTAGTCCTCCTCTGTGTCGATTCCACCATTGTTGATGATGAACTCAAACGCGTAGTCCATC
AGACCTCCATTGCACCCCTGGTTGTATGAAGTGTCACAGTCAACAAGCTCTTGCTCAGACAAGGAGATCAGGTCGCCTGTAACAATCTGGTTGATGCCTT
CCACAGCTGCTATTGTTGAGAAAGCCCAGCAACTCCCTGAAAGAGATAGACAAAGATCAGATTTCAACACCAGTATGTCATCAATACCACCGTTATATTT
TACTAATCAATTCAAAATGTACGCAAGCAATGACACAAAGGTATAAAATATAGTGACAGATACTTGATGGGAAATATCTTTTATGCATATACTATTTTTT
ATTAAAAGAAGAAATTGGTGGTGATGAACAGGAAGCAGACGAAGACATGTGACCAATAGGAACGTAAAGCGGCCACAAGAGCCGTGATGAAAATCGTTTC
CAACATCCTATCAGGAACCATGTAGTGAGCTTGGCTAATAAGAGAAAAAAGGACTAATTGGTCCATCAGCCTTATCAAGTTGACAAGGACCGCTATTGGT
TCAAGGACGGTCACTGGAGTTCACAAGGAGCAAACGGCAGTGGAGTCCACGTTCGATGAACCTACTTCCTAGTATCTGTCCCCCTTCATGCAAAACCATA
AAGATCAATACAATACATCTGTCACTCCTGCCTCCCGTATTGATACATGTGATTTCCAGTTATACCAACAGACAAATAGAAATGAATTTCAATTAGAAAA
AGGTTTGCAGGTACAAAGAATCATCCCACAACTTGGCTTAGAACTGATATAAACTACTCCAGTAACCAAAATAGAATATCATGATTTAGGAATTTTATTT
ATTATATTTGTTTCTACGTATATGGTTGGAATTCAGAAATTTATATGTGCGCCATGTTTGCAATCTCCGTTCATTTCGAGGCGTGACTAACTAGCTGCAT
AAGCTGGCCGTTGAACTTCAGGTAGAAGATACAAATCTCGTACTTTGATGTTCGATCATGTGCAGATACTTTTTTGAGGAAACCTGTGCAGATACTAATC
CAAACTACTGCAATTTGACGAATACTAGTAGGCTTCACAATTTCCCGATAATCAAGGACCAAACAAATAAGCCCGTAGAATCTTCCCTTGTTCTAGAATT
ACGGAGGACGATAGCTTTTAGCAGCAGGAGAGGAATAAAAAATGGATCAGCTTACCGCAGCTTCCCTGGTCCTTGACCTCTGCGACGGCGCCCTTGGTCC
TCCAGTCGACGGATTCCGGCAGCTCCTCGTCGTCGGCGGCTAGGTACCTGGCGCTGAGCTTCCTCTCCCTCTGCGGCTTGGCCCTGACGCCGAGGGCGTT
GTAGGTCCGGCCGTGCGTGGCCATCCACTCCGCGTACATCCGCCGCGTCTCCTCCTCGCTCCGCTCGCCGTAGGACACGATCGACATGTCCGCCGCCGCG
GCCAGGGTTACCAGCAGCAGCAGCGCCGCCGCCGCCGCGAGCGACGCCGTAGAGGAGGTACCCATCTCCGCTGCTCCGAGAAGACTAGCCGAGGAGGAGG
AGGAGCAGGTGGATGAGAGGGAGCAGAGTCAGAGGGGGAGGAGATGGAGGCCGCCTTCCTTTTCTATCCATG