CANTATAdb - search

Detailed information on CNT30365808

BLAST search results

BLAST vs Swiss-Prot:
sp|P32957|CYSP4_VASCU, E-value = 9e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30553550	Sorghum bicolor	Oryza glaberrima	15.75	55.23	88.64	132	forward
CNT30466088	Sorghum bicolor	Saccharum spontaneum	17.42	54.28	97.95	146	forward
CNT30584982	Sorghum bicolor	Echinochloa crusgalli	28.76	14.41	90.87	241	forward
CNT30498134	Sorghum bicolor	Digitaria exilis	28.04	59.64	88.51	235	forward
CNT30558531	Sorghum bicolor	Panicum hallii	17.42	58.63	91.78	146	forward

Expression of CNT30365808

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPEQLTHVLSRIIKQVSFQPQESNKKKAGRRLV*

>peptide 2 (77 aa)
MFYLELLSRSAFNRRRAIKKRQGGDWYESLPQLPWSLTSATAPLVLQSTDSGRSSLSSAWYLALSFLSLCGLVLTPR*

>peptide 3 (38 aa)
MIDMSAAAASDTSSSSAAAAAASDVVVEAPISDALQEG*

Sequence

>CNT30365808
GTTAAACAAATCCCATAAAATTAGCTCTAGAACCGAAACAAAGCTGTAACCAAACAGAATAATTTTATTTGAAGTAATTGTTAGCGTGTCTATCTATGGA
CTTCGAATTCAAAAGCGTACTAATCTATATGCGTGCCATCTCTGCAACCTCCCACCCATTATAAGGCACGACTAACGAATTGCAGAAGCAGAAGCTTGCC
GCTTAGCGTTGACCTTCAGGTAGAACCGTAGAAGACACAAATCCCCTACTCCCTTTTTTTTCCTCATGTGGATAACAATAAAAACTACCTACTGCAAGTT
GCGGATGAACAGACTTTACAGTTTTTTCGGGCGAAACATATAGAAAACATGCCCGAACAACTTACCCATGTTCTATCTAGAATTATTAAGCAGGTCAGCT
TTCAACCGCAGGAGAGCAATAAAAAAAAGGCAGGGAGGAGATTGGTATGAAAGCTTACCGCAGCTGCCCTGGTCCTTGACCTCCGCGACGGCGCCCTTGG
TCCTCCAATCAACGGACTCCGGCAGGTCCTCGTTATCGTCGGCGTGGTACCTGGCGCTGAGCTTCCTCTCCCTCTGCGGCTTGGTCCTGACGCCGAGGTA
GGTCCGGCCGTGCGTCGCCATCCACTCCGCGTACATCCGCCGCGTCTCCTCCTCGCTCCGCTCCCCGTAGGAGATGATCGACATGTCCGCCGCCGCGGCG
AGCGACACGAGCAGCAGCAGCGCTGCCGCCGCCGCCGCCAGCGACGTGGTGGTGGAGGCGCCCATCTCCGACGCGCTACAGGAAGGCTAGAGCTTGCTAG
CTAGGGAGAGGAGGGATGAGAGGTGGACAGGAGGCCCT