Detailed information on CNT3060679


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 4e-117

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373848Arabidopsis lyrataArabidopsis thaliana49.3328.2797.3296forward
CNT3019671Arabidopsis lyrataCitrullus lanatus2023.7689.17120forward
CNT30539881Arabidopsis lyrataBrassica napus9272.1689.13552forward
CNT30235067Arabidopsis lyrataBrassica oleracea43.3336.6291.54260forward
CNT30171234Arabidopsis lyrataTrifolium pratense19.3320.1488.79116forward
CNT30310534Arabidopsis lyrataCamelina sativa4321.7996.51258forward
CNT3078263Arabidopsis lyrataBrassica juncea95.1773.3986.51571forward
CNT30261562Arabidopsis lyrataBrassica rapa54.1744.3489.54325forward
CNT30611567Arabidopsis lyrataArabis alpina32.3350.1389.69194forward
CNT30480879Arabidopsis lyrataArabidopsis halleri37.6747.9891.15226forward
CNT30417231Arabidopsis lyrataPapaver somniferum42.534.2783.92255forward

Expression of CNT3060679

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGRSCHLGKASPLPLPMGHFRRLCSLQQLP*

>peptide 2 (64 aa)
MGCLMDPLAWQQSSSLSHGRFRGHLMPPASQPFRRRQGRTKPWLRKPLESFFFFFCFSVLFFVVT

>peptide 3 (77 aa)
GDDGLNEESKHREHSQPPVLELLHLQLRESLGVSSEAQWVEAATWVKQVLCLSQWAISGDSVAFNSSHEDHLSSPNG*

Sequence

>CNT3060679
GGTGACGATGGCTTGAACGAAGAATCCAAACATAGAGAACATAGCCAACCTCCCGTTCTTGAGCTCCTTCACCTTCAACTCCGCGAAAGCCTCGGGGTCA
GTAGCGAGGCCCAATGGGTCGAAGCTGCCACCTGGGTAAAGCAAGTCCTCTGCCTCTCCCAATGGGCCATTTCCGGCGACTCTGTAGCCTTCAACAGCTC
CCATGAGGATCACTTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTCGGCTCACGGTTCCTGGCGAAGGTCTCTGGGTCGGCGGATAG
ACCGGCGGTGTCCCATCCGTAGTCACCGGGGAACTCTCCGGTAAGGTAGCTCGGGGGCTCGCCGGAGAATGGACCCAAGTACTTGACACGGTCAGATCCG
TACCATGGGCTGCCTGATGGACCCTTTGGCTTGGCAACAGTCTTCCTCATTGTCACACGGCCGCTTCCGAGGACATCTGATGCCGCCGGCTTCACAGCCT
TTCCGGCGAAGGCAGGGGAGGACAAAGCCATGGTTGAGGAAGCCATTAGAATCTTTCTTCTTCTTTTTTTGTTTTTCTGTTTTGTTTTTTGTTGTGACTG